Gene detail information of Glyur001558s00034000.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23540.17.00E-31Mov34/MPN/PAD-1 family protein
NRAFW79598.13.28E-35hypothetical protein ZEAMMB73_162591 [Zea mays]
Swissprottr|Q9LT08|PSDE_ARATH7.00E-3726S proteasome non-ATPase regulatory subunit 14 homolog
trEMBLtr|K7UX93|K7UX93_MAIZE1.00E-35Uncharacterized protein {ECO:0000313|EMBL:AFW79598.1, ECO:0000313|EnsemblPlants:GRMZM2G467059_P02}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015584872150194+


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001558s00034000.1PF01398.16JAB1631.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.321
SRR1783600control0.103
SRR1783602moderate drought stress0.053
SRR1811619moderate drought stress0.161

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.378
DRR006520Root Summer glycyrrhizin high producing strain2.071
DRR006521Root Winter glycyrrhizin high producing strain1.173
DRR006522Root Winter glycyrrhizin high producing strain1.521
DRR006523Root Summer glycyrrhizin low producing strain2.135
DRR006524Root Summer glycyrrhizin low producing strain1.068
DRR006525Leaf Summer glycyrrhizin high producing strain0.487
DRR006526Leaf Summer glycyrrhizin high producing strain1.431

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.595
SRR2868004Drought Stress(Tissue:root)0.346
SRR2967015Control (Tissue:root)0.482

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.051
SRR9715740Leave0.349
SRR9715741Leave0.295
SRR9715739Root0.106
SRR9715742Root0.341
SRR9715743Root0.197

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.097
SRR8749028MeJA induced 9h0.089
SRR8749029MeJA induced 9h0.136
SRR8749030Uninduced0.146
SRR8749031Uninduced0.063
SRR8749032Uninduced0.014

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.743
SRR8400027Control-Root0.848

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved