Gene detail information of Glyur001565s00038212.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76900.23.00E-163tubby like protein 1
NRKDP30771.10hypothetical protein JCGZ_15200 [Jatropha curcas]
Swissprottr|Q75HX5|TLP8_ORYSJ0Tubby-like F-box protein 8
trEMBLtr|A0A067K3J2|A0A067K3J2_JATCU0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015651551121245-


Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box
EAR motif-containing ProteinsTUB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001565s00038212.1PF00646.28F-box531056.80E-10
Glyur001565s00038212.1PF01167.13Tub1184271.80E-115


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.278
SRR1783600control16.350
SRR1783602moderate drought stress18.685
SRR1811619moderate drought stress18.673

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.047
DRR006520Root Summer glycyrrhizin high producing strain17.541
DRR006521Root Winter glycyrrhizin high producing strain40.360
DRR006522Root Winter glycyrrhizin high producing strain39.302
DRR006523Root Summer glycyrrhizin low producing strain17.117
DRR006524Root Summer glycyrrhizin low producing strain17.209
DRR006525Leaf Summer glycyrrhizin high producing strain14.243
DRR006526Leaf Summer glycyrrhizin high producing strain14.159

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.946
SRR2868004Drought Stress(Tissue:root)51.513
SRR2967015Control (Tissue:root)67.752

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.319
SRR9715740Leave21.031
SRR9715741Leave30.546
SRR9715739Root10.235
SRR9715742Root21.277
SRR9715743Root16.032

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.372
SRR8749028MeJA induced 9h34.199
SRR8749029MeJA induced 9h20.444
SRR8749030Uninduced23.821
SRR8749031Uninduced26.174
SRR8749032Uninduced20.513

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.556
SRR8400027Control-Root24.241