Gene detail information of Glyur001572s00035823.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01220.1 | 0 | sulfoquinovosyldiacylglycerol 2 |
| NR | AES79437.2 | 0 | group 1 family glycosyltransferase [Medicago truncatula] |
| COG | YP_007124156.1 | 4.00E-98 | glycosyltransferase [Microcoleus sp. PCC 7113] |
| trEMBL | tr|G7L6J3|G7L6J3_MEDTR | 0 | Group 1 family glycosyltransferase {ECO:0000313|EMBL:AES79437.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01572 | 14168 | 19258 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06119 | SQD2 | EC:2.4.1.- | Glycerolipid metabolism | map00561 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001572s00035823.1 | PF13579.1 | Glyco_trans_4_4 | 130 | 285 | 3.30E-15 |
| Glyur001572s00035823.1 | PF00534.15 | Glycos_transf_1 | 316 | 469 | 6.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.275 |
| SRR1783600 | control | 4.151 |
| SRR1783602 | moderate drought stress | 4.780 |
| SRR1811619 | moderate drought stress | 4.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.991 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.010 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.857 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.823 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.291 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.547 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.384 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.626 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.435 |
| SRR2967015 | Control (Tissue:root) | 21.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 50.139 |
| SRR9715740 | Leave | 63.215 |
| SRR9715741 | Leave | 49.830 |
| SRR9715739 | Root | 3.751 |
| SRR9715742 | Root | 5.760 |
| SRR9715743 | Root | 5.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.433 |
| SRR8749028 | MeJA induced 9h | 1.990 |
| SRR8749029 | MeJA induced 9h | 0.922 |
| SRR8749030 | Uninduced | 0.465 |
| SRR8749031 | Uninduced | 0.043 |
| SRR8749032 | Uninduced | 0.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.156 |
| SRR8400027 | Control-Root | 15.117 |