Gene detail information of Glyur001574s00034449.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38140.1 | 4.00E-16 | RING/U-box superfamily protein |
| NR | XP_006589748.1 | 6.09E-59 | PREDICTED: RING-H2 finger protein ATL18-like [Glycine max] |
| Swissprot | tr|Q9SZL4|ATL18_ARATH | 2.00E-23 | RING-H2 finger protein ATL18 (Precursor) |
| trEMBL | tr|K7LM19|K7LM19_SOYBN | 2.00E-59 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G43518.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01574 | 62312 | 62791 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001574s00034449.1 | PF13639.1 | zf-RING_2 | 75 | 119 | 1.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.047 |
| SRR1783600 | control | 0.048 |
| SRR1783602 | moderate drought stress | 0.049 |
| SRR1811619 | moderate drought stress | 0.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.145 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.284 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.350 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.156 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.692 |
| SRR2967015 | Control (Tissue:root) | 1.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.165 |
| SRR9715740 | Leave | 0.083 |
| SRR9715741 | Leave | 0.086 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.826 |
| SRR8749028 | MeJA induced 9h | 0.681 |
| SRR8749029 | MeJA induced 9h | 0.167 |
| SRR8749030 | Uninduced | 0.385 |
| SRR8749031 | Uninduced | 0.504 |
| SRR8749032 | Uninduced | 0.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.328 |
| SRR8400027 | Control-Root | 0.322 |