Gene detail

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Gene detail information of Glyur001575s00033022.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73080.1	0	PEP1 receptor 1
NR	XP_007133279.1	0	hypothetical protein PHAVU_011G166400g [Phaseolus vulgaris]
COG	YP_004775215.1	8.00E-57	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P93194\|RPK1_IPONI	0	Receptor-like protein kinase (Precursor)
trEMBL	tr\|V7AK99\|V7AK99_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05273.1}

Sequence

Transcript Sequence

>Glyur001575s00033022.1
ATGACAGGGTTCAGCTTGTTCATGCTATGCTTATCTGCTTTGTTATCTAATGTNAATGCTTTGAACGCTGATGGGGTGACTTTGCTGTCACTTTTGAGGCATTGGACATTTGTGCCTCCTCCCATAAACTTGAGTTGGAAGAATGCTTCNGNCTCTACTCCATGCTNTTGGGTAGGAATCAAGTGTGACAATGCCCTCAATGTAATCACNATTAATCTCACTGGATACTCAATTTCTGGTTCCTTAGGACCTGAAATAGCACACTTGAGTCACTTGCAAAACATTGACTTGAGTTCTAACGGCCTCTCTGGAAACATACCCTTAGAGTTGGGGAATTGTAGTCTGCTTGAGTACTTGGACCTTTCTAGCAACAGTTTCACTGGTCAAATACCATATGGTTTGACAAACTTGCAGGAGTTAAGGCTTTTTAATGTTAATGAAAACCTTCTAATTGGTGAAATCCCTGAATCCATTCTTCAAATACCACACTTGGAACATCTGATCCTGAGTCATAACTATTTGACCGGTCTCATTCCCATGAGTATTGGGANCGGGACAAGTCTTCTGAGGCTNCATCTGAATACCAATCANTTGTCAGGTGTGATCCCTTTTTCCATTGGAAACTGCAGTAAGTTAATGGAATTATTCTTGAATGACAACTGGTTGCATGGATTTCTGCCTGAAAGTTTAGACAGTCTCACAAATCTTGTTTATTTAGGTGTCAATAACAACAGTCTTGTGGGTACAATTCCATTAGTTTCTGGTAGATGCAAANGTTTATACTATTTAGATGTGTCAAACAATAAATTTAGTGGGGGTATACCATCAAGCTTGGGAAATTGTAGCAGATTAACAAAATTTTATGCTTTCAATGCAACTTTAGTAGGCAGCATCCCTTCATCCTTGGGACTACTAAGTGAACTTTCCATTCTCAGCGTTGCAATGAATAAATTGTCTGGTCAAATACCCTCAGAAATTGGCAACTGCAAGTCCTTGAAGGAGTTATTTTTAAATGACAATCAACTTGAGGGAAAGATTCCTAGTGAATTAGGAATGCTAAGTGAATTACAAGATCTTAGATTGTGGTCTAACCATTTAACAGGTGAAATTCCACTTAGCATTTGGAAGATTCCTAGTCTTGTGTNTGTCCATGTGTATAACAATAATCTTTCTGGTGAACTTCCATTGGAAATGACAAACCTCAAACACTTGAAAAATATGACCTTTTATAACAACCATTTCTCTGGAGCCATTCCTCAAAACTTGGGAATCAATAGTAGTTTAATGGGGTTGGACATAACAAATAATTCCTTCACAGGTAACATCCCTCCAAATCTTTGCTTTGGGAAGCAATTAAAATGGTTAGCCTTGAGTTTGAACCAACTGCAAGGTGGCATACCTGTTGACATAGGAAGGTGTACATCTCTTACTAGGTTGCTTCTCAATAAAAATAATTTAACTGGTGCTTTACCNGAGTTTGAAAGCAATAGCAGTCTCAACTACATGGATATTAGTGAGAACAACATCAGTGGAGTAATTCCATCAACTNTGGGAAAATGCACAAATNTTACTGATGTTAGTTTGTCCCACAACAATTTTAGGGGCCATATACCCTTGGAGTTGGGAAGGCTTGTGAATCTTCATAGGCTAAATCTCTCTCATAACAAGTTGGAAGGTCCTTTGCCACCTGAGCTGTCAAATTGCAACAAAATAGAATTCTTTGATGTGGGATTCAACTTTCTATATGGTTCATTCCCATCAAGTTTCAAAAGTTGGAAGTGGCTGACCATGTTAACCTTAAGAGAGAATCATTTCACTGGCGGTATCCCAAATTTTTTATCAGAATTTGAACATCTTTCTGATCTAGCACTTGGGGGAAACTTTTTTGGAGGCCAAATTCCCAGATCAATTGGTGAGCTTCAGAATTTGAACTATGGTTTGAATTTAAGTGCTAATGAGTTGACAGGTGAAATTCCTTTAGAGATTGGGAAACTGAAATTGCTGCAAACATTGGATCTATCTGTTAACAATTTGTCTGGAAACATTGAAGTTCTTGACGATCTCCCTTCATTGATTGCAATCAATATTTCATCCAATTACTTTCTTGGTCCTCTTCCAGATACACTGGTGAACTTGCTCCATTCTTCTCCATCATCATTCTTGGGCAACCCTGGCTTATGTGTCAGATGTACACCATCAAATGGCTTGAATTGTTCCAAAAGCAACAGTTTGAAGACATGTGACAACAAGTCCACTCATCCAAAACAAATAAGTAAAATTAAACTCGGCATGATAGCACTTGGATGCACACTACTTGTGATATTTCTGTTGTTTGGTCTTGTTTATGTGCTACACTCTAAGCAGGATGTGAAGATCTTTCCTNACCAAAAGTCATCTTCCTTCCTCAAGAAAGTGATGAAGGCTACAGAGAACCTAAATGATAGGCACATTATTGGCAGAGGAGCACATGGGGTTGTTTATAAAGTTGAACTCAATCCAGACCAAGTTTTTGCTATTAAGAAAATTGTTTTTGCAGACAACAAAGGGCAGATCACAAGCATGAGTAGGGAGATTGAAACCATGGGGAAGATTAGGCACCGAAATCTGGTAAGAATAAAAAACATCTGGATGAGAAAGGACTATGGCCTAATTCTGTACAAGTACATGGAAAATGGAAGTCTTCATGACGTTCTGCATGAAAAGTATCCACCACCATCTTTAGAGTGGAGTGTCCGCTATAAGATTGCTGTTGGAATTGCATATGGACTAGAATATCTCCATCATGATTACAATCCTATCATATTGCACAGGGACATTAAACCAAAGAATGTACTTTTGGATTCTGANATGGAGCCTCACATTACTGATTTTGGCATTGCCACACTTTTGGATCATTCTTCTATTTCAGTGCAATCTCTCTTGGTTCCTGGTACAGTGGGATATATTGCACCTGAGAATGCGTACTCCACAGTGATGAGTACGAAGTCAGATGTATATAGTTATGGAGTGGTTTTGCTTGAGTTAATAACCAGAAAGAAGGTGCTAAATGATCCTTCATTTACGACGGAAACTCACATTGTAGGGTGGGTTAAATCTGTGTGGGAAGAAACAAGAGACATTGATAGCATTGTGGATTCNAACCTCNTAAAGGAGCTTTGGGCCTCCAATTTGAGGGACCAAGTTGAACAAGTGCTTTTGGTGGCATTGAGATGCACTGATAAGAATCCAGATGAGAGACCAACGATGAGAGAAGTCGTCAAGCAATTGGTTAAATACAAAGCTCCTGACATTAAGAACTAGTTGAAACTACACCTACATATGAGAACATTGTCTTTGTTCTTTATGTCCATTGGCTTGTTGAAATT

Protein Sequence

>Glyur001575s00033022.1
MTGFSLFMLCLSALLSNVNALNADGVTLLSLLRHWTFVPPPINLSWKNASXSTPCXWVGIKCDNALNVITINLTGYSISGSLGPEIAHLSHLQNIDLSSNGLSGNIPLELGNCSLLEYLDLSSNSFTGQIPYGLTNLQELRLFNVNENLLIGEIPESILQIPHLEHLILSHNYLTGLIPMSIGXGTSLLRLHLNTNXLSGVIPFSIGNCSKLMELFLNDNWLHGFLPESLDSLTNLVYLGVNNNSLVGTIPLVSGRCKXLYYLDVSNNKFSGGIPSSLGNCSRLTKFYAFNATLVGSIPSSLGLLSELSILSVAMNKLSGQIPSEIGNCKSLKELFLNDNQLEGKIPSELGMLSELQDLRLWSNHLTGEIPLSIWKIPSLVXVHVYNNNLSGELPLEMTNLKHLKNMTFYNNHFSGAIPQNLGINSSLMGLDITNNSFTGNIPPNLCFGKQLKWLALSLNQLQGGIPVDIGRCTSLTRLLLNKNNLTGALPEFESNSSLNYMDISENNISGVIPSTXGKCTNXTDVSLSHNNFRGHIPLELGRLVNLHRLNLSHNKLEGPLPPELSNCNKIEFFDVGFNFLYGSFPSSFKSWKWLTMLTLRENHFTGGIPNFLSEFEHLSDLALGGNFFGGQIPRSIGELQNLNYGLNLSANELTGEIPLEIGKLKLLQTLDLSVNNLSGNIEVLDDLPSLIAINISSNYFLGPLPDTLVNLLHSSPSSFLGNPGLCVRCTPSNGLNCSKSNSLKTCDNKSTHPKQISKIKLGMIALGCTLLVIFLLFGLVYVLHSKQDVKIFPXQKSSSFLKKVMKATENLNDRHIIGRGAHGVVYKVELNPDQVFAIKKIVFADNKGQITSMSREIETMGKIRHRNLVRIKNIWMRKDYGLILYKYMENGSLHDVLHEKYPPPSLEWSVRYKIAVGIAYGLEYLHHDYNPIILHRDIKPKNVLLDSXMEPHITDFGIATLLDHSSISVQSLLVPGTVGYIAPENAYSTVMSTKSDVYSYGVVLLELITRKKVLNDPSFTTETHIVGWVKSVWEETRDIDSIVDSNLXKELWASNLRDQVEQVLLVALRCTDKNPDERPTMREVVKQLVKYKAPDIKN

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01575	13872	17353	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001575s00033022.1	PF08263.7	LRRNT_2	22	63	8.80E-05
Glyur001575s00033022.1	PF00560.28	LRR_1	91	113	0.44
Glyur001575s00033022.1	PF00560.28	LRR_1	116	137	0.085
Glyur001575s00033022.1	PF13516.1	LRR_6	162	183	0.84
Glyur001575s00033022.1	PF00560.28	LRR_1	260	281	1
Glyur001575s00033022.1	PF13516.1	LRR_6	329	350	1.8
Glyur001575s00033022.1	PF00560.28	LRR_1	546	568	0.048
Glyur001575s00033022.1	PF00069.20	Pkinase	816	1088	7.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.122
SRR1783600	control	1.166
SRR1783602	moderate drought stress	2.232
SRR1811619	moderate drought stress	2.219

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.567
DRR006520	Root Summer glycyrrhizin high producing strain	1.522
DRR006521	Root Winter glycyrrhizin high producing strain	4.601
DRR006522	Root Winter glycyrrhizin high producing strain	4.604
DRR006523	Root Summer glycyrrhizin low producing strain	2.579
DRR006524	Root Summer glycyrrhizin low producing strain	2.537
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.165
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.165

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.314
SRR2868004	Drought Stress(Tissue:root)	13.209
SRR2967015	Control (Tissue:root)	9.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.099
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.037
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.632
SRR8749028	MeJA induced 9h	7.469
SRR8749029	MeJA induced 9h	5.484
SRR8749030	Uninduced	5.949
SRR8749031	Uninduced	4.517
SRR8749032	Uninduced	4.197

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.941
SRR8400027	Control-Root	0.748