Gene detail information of Glyur001575s00033023.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29630.2 | 5.00E-08 | 5'-3' exonuclease family protein |
| NR | XP_004504251.1 | 2.58E-08 | PREDICTED: exonuclease 1-like [Cicer arietinum] |
| Swissprot | tr|Q8L6Z7|EXO1_ARATH | 9.00E-09 | Exonuclease 1 |
| trEMBL | tr|A0A072TU35|A0A072TU35_MEDTR | 2.00E-08 | 5'-3' exonuclease family protein {ECO:0000313|EMBL:KEH20701.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01575 | 21386 | 22868 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10746 | EXO1 | EC:3.1.-.- | Mismatch repair | map03430 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.317 |
| SRR1783600 | control | 0.608 |
| SRR1783602 | moderate drought stress | 0.681 |
| SRR1811619 | moderate drought stress | 0.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.501 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.471 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.672 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.320 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.342 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.994 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.373 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.453 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.116 |
| SRR2967015 | Control (Tissue:root) | 1.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.110 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.083 |
| SRR8749028 | MeJA induced 9h | 1.674 |
| SRR8749029 | MeJA induced 9h | 0.806 |
| SRR8749030 | Uninduced | 0.503 |
| SRR8749031 | Uninduced | 0.254 |
| SRR8749032 | Uninduced | 0.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.269 |
| SRR8400027 | Control-Root | 0.064 |