Gene detail information of Glyur001575s00033025.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01930.16.00E-138Glycosyl hydrolase superfamily protein
NRAET01148.20mannan endo-1,4-beta-mannosidase-like protein [Medicago truncatula]
COGYP_003324408.13.00E-41glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|Q9LZV3|MAN6_ARATH0Mannan endo-1,4-beta-mannosidase 6 (Precursor)
trEMBLtr|G7LAQ6|G7LAQ6_MEDTR0Mannan endo-1,4-beta-mannosidase-like protein {ECO:0000313|EMBL:AET01148.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015753746741371-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19355MAN EC:3.2.1.78 Fructose and mannose metabolism map00051


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001575s00033025.1PF00150.13Cellulase702611.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.062
SRR1783600control5.501
SRR1783602moderate drought stress3.316
SRR1811619moderate drought stress3.640

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.800
DRR006520Root Summer glycyrrhizin high producing strain10.647
DRR006521Root Winter glycyrrhizin high producing strain0.073
DRR006522Root Winter glycyrrhizin high producing strain0.357
DRR006523Root Summer glycyrrhizin low producing strain16.478
DRR006524Root Summer glycyrrhizin low producing strain15.882
DRR006525Leaf Summer glycyrrhizin high producing strain8.733
DRR006526Leaf Summer glycyrrhizin high producing strain7.998

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.435
SRR2868004Drought Stress(Tissue:root)15.159
SRR2967015Control (Tissue:root)19.338

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.482
SRR9715740Leave0.465
SRR9715741Leave1.053
SRR9715739Root0.559
SRR9715742Root11.764
SRR9715743Root9.971

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.146
SRR8749028MeJA induced 9h0.057
SRR8749029MeJA induced 9h0.296
SRR8749030Uninduced0.079
SRR8749031Uninduced0.086
SRR8749032Uninduced0.138

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.237
SRR8400027Control-Root12.032

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved