Gene detail information of Glyur001575s00033026.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08380.1 | 4.00E-114 | alpha-galactosidase 1 |
| NR | XP_003548331.1 | 3.76E-152 | PREDICTED: alpha-galactosidase-like [Glycine max] |
| COG | YP_004960350.1 | 3.00E-84 | secreted alpha-galactosidase [Streptomyces bingchenggensis BCW-1] |
| Swissprot | tr|Q42656|AGAL_COFAR | 2.00E-119 | Alpha-galactosidase (Precursor) |
| trEMBL | tr|K7MJ32|K7MJ32_SOYBN | 2.00E-148 | Alpha-galactosidase {ECO:0000256|RuleBase:RU361168} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01575 | 55004 | 58890 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K07407 | E3.2.1.22B, galA, rafA | EC:3.2.1.22 | Galactose metabolism | map00052 |
| Glycerolipid metabolism | map00561 | |||
| Sphingolipid metabolism | map00600 | |||
| Glycosphingolipid biosynthesis - globo and isoglobo series | map00603 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.536 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.118 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.201 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.083 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.414 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.039 |
| SRR2967015 | Control (Tissue:root) | 0.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.071 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.587 |
| SRR9715743 | Root | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.490 |
| SRR8749028 | MeJA induced 9h | 0.304 |
| SRR8749029 | MeJA induced 9h | 1.056 |
| SRR8749030 | Uninduced | 0.123 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.533 |
| SRR8400027 | Control-Root | 0.247 |