Gene detail information of Glyur001576s00038510.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67850.2 | 5.00E-101 | Protein of unknown function (DUF707) |
| NR | XP_006604009.1 | 7.16E-136 | PREDICTED: uncharacterized protein LOC100776711 isoform X3 [Glycine max] |
| trEMBL | tr|A0A072U8C5|A0A072U8C5_MEDTR | 2.00E-135 | Lysine ketoglutarate reductase trans-splicing-like protein {ECO:0000313|EMBL:KEH22115.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01576 | 31210 | 33867 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001576s00038510.1 | PF05212.7 | DUF707 | 5 | 140 | 4.10E-72 |
| Glyur001576s00038510.1 | PF05212.7 | DUF707 | 141 | 223 | 3.10E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.926 |
| SRR1783600 | control | 2.766 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.665 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.079 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.652 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.550 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.398 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.956 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.329 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.951 |
| SRR2967015 | Control (Tissue:root) | 2.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.792 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 4.776 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 3.112 |
| SRR9715743 | Root | 3.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.235 |
| SRR8749028 | MeJA induced 9h | 24.589 |
| SRR8749029 | MeJA induced 9h | 19.365 |
| SRR8749030 | Uninduced | 17.508 |
| SRR8749031 | Uninduced | 12.067 |
| SRR8749032 | Uninduced | 16.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.919 |
| SRR8400027 | Control-Root | 1.302 |