Gene detail information of Glyur001580s00039244.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29970.1 | 3.00E-149 | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_004500495.1 | 0 | PREDICTED: uncharacterized protein LOC101500860 [Cicer arietinum] |
| COG | YP_004112540.1 | 4.00E-09 | ATP-dependent chaperone ClpB [Desulfurispirillum indicum S5] |
| Swissprot | tr|P35100|CLPC_PEA | 3.00E-08 | Chaperone protein ClpC, chloroplastic (Precursor) |
| trEMBL | tr|I1LMS2|I1LMS2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G35410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01580 | 10592 | 16025 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001580s00039244.1 | PF02861.15 | Clp_N | 23 | 56 | 3.8 |
| Glyur001580s00039244.1 | PF02861.15 | Clp_N | 153 | 188 | 0.35 |
| Glyur001580s00039244.1 | PF07724.9 | AAA_2 | 734 | 841 | 0.00012 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.134 |
| SRR1783600 | control | 34.284 |
| SRR1783602 | moderate drought stress | 36.163 |
| SRR1811619 | moderate drought stress | 36.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 98.291 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 96.538 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.835 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.823 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 95.932 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 95.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.434 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.054 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.805 |
| SRR2967015 | Control (Tissue:root) | 34.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.632 |
| SRR9715740 | Leave | 10.026 |
| SRR9715741 | Leave | 4.934 |
| SRR9715739 | Root | 6.347 |
| SRR9715742 | Root | 60.942 |
| SRR9715743 | Root | 50.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.668 |
| SRR8749028 | MeJA induced 9h | 1.625 |
| SRR8749029 | MeJA induced 9h | 0.644 |
| SRR8749030 | Uninduced | 0.408 |
| SRR8749031 | Uninduced | 0.094 |
| SRR8749032 | Uninduced | 0.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.669 |
| SRR8400027 | Control-Root | 49.686 |