Gene detail information of Glyur001582s00029511.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43710.1 | 0 | Glycosyl hydrolase family 47 protein |
| NR | XP_004495394.1 | 0 | PREDICTED: probable alpha-mannosidase I MNS4-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FG93|MNS4_ARATH | 0 | Probable alpha-mannosidase I MNS4 |
| trEMBL | tr|I1LC43|I1LC43_SOYBN | 0 | alpha-1,2-Mannosidase {ECO:0000256|RuleBase:RU361193} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01582 | 33176 | 41450 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001582s00029511.1 | PF01532.15 | Glyco_hydro_47 | 48 | 471 | 3.30E-136 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.518 |
| SRR1783600 | control | 7.539 |
| SRR1783602 | moderate drought stress | 7.223 |
| SRR1811619 | moderate drought stress | 7.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.345 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.818 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.291 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.239 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.292 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.879 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.533 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.529 |
| SRR2967015 | Control (Tissue:root) | 19.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.361 |
| SRR9715740 | Leave | 8.862 |
| SRR9715741 | Leave | 10.842 |
| SRR9715739 | Root | 3.410 |
| SRR9715742 | Root | 11.995 |
| SRR9715743 | Root | 8.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.782 |
| SRR8749028 | MeJA induced 9h | 10.377 |
| SRR8749029 | MeJA induced 9h | 4.615 |
| SRR8749030 | Uninduced | 3.957 |
| SRR8749031 | Uninduced | 3.425 |
| SRR8749032 | Uninduced | 2.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.730 |
| SRR8400027 | Control-Root | 19.399 |