Gene detail information of Glyur001583s00042333.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G36370.11.00E-17serine hydroxymethyltransferase 7
NRXP_007136198.11.41E-32hypothetical protein PHAVU_009G0264000g, partial [Phaseolus vulgaris]
Swissprottr|Q84WV0|GLYC7_ARATH4.00E-24Serine hydroxymethyltransferase 7
trEMBLtr|V7ARC0|V7ARC0_PHAVU5.00E-33Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015835318556144+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.230
SRR1783600control0.229
SRR1783602moderate drought stress1.760
SRR1811619moderate drought stress2.493

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.706
DRR006520Root Summer glycyrrhizin high producing strain2.367
DRR006521Root Winter glycyrrhizin high producing strain2.413
DRR006522Root Winter glycyrrhizin high producing strain5.148
DRR006523Root Summer glycyrrhizin low producing strain0.687
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.292

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.145
SRR2868004Drought Stress(Tissue:root)0.000
SRR2967015Control (Tissue:root)0.153

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.359
SRR9715740Leave0.695
SRR9715741Leave1.063
SRR9715739Root0.265
SRR9715742Root1.278
SRR9715743Root1.019

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.367
SRR8749028MeJA induced 9h1.353
SRR8749029MeJA induced 9h0.812
SRR8749030Uninduced2.164
SRR8749031Uninduced0.129
SRR8749032Uninduced0.686

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.175
SRR8400027Control-Root1.013

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved