Gene detail information of Glyur001583s00042334.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G22020.13.00E-11serine hydroxymethyltransferase 6
NRXP_002513846.19.79E-13serine hydroxymethyltransferase, putative [Ricinus communis]
Swissprottr|Q9LM59|GLYC6_ARATH3.00E-12Serine hydroxymethyltransferase 6
trEMBLtr|B9RJC7|B9RJC7_RICCO4.00E-13Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015835812060855+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001583s00042334.1PF00464.14SHMT881305.80E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.693
SRR1783600control0.376
SRR1783602moderate drought stress2.803
SRR1811619moderate drought stress2.017

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.438
DRR006520Root Summer glycyrrhizin high producing strain1.795
DRR006521Root Winter glycyrrhizin high producing strain6.350
DRR006522Root Winter glycyrrhizin high producing strain3.543
DRR006523Root Summer glycyrrhizin low producing strain2.079
DRR006524Root Summer glycyrrhizin low producing strain2.774
DRR006525Leaf Summer glycyrrhizin high producing strain0.565
DRR006526Leaf Summer glycyrrhizin high producing strain0.712

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.788
SRR2868004Drought Stress(Tissue:root)3.067
SRR2967015Control (Tissue:root)2.208

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.680
SRR9715740Leave1.903
SRR9715741Leave1.395
SRR9715739Root0.618
SRR9715742Root0.444
SRR9715743Root1.180

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.834
SRR8749028MeJA induced 9h2.739
SRR8749029MeJA induced 9h2.138
SRR8749030Uninduced1.518
SRR8749031Uninduced0.383
SRR8749032Uninduced1.297

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.195
SRR8400027Control-Root3.434

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved