Gene detail information of Glyur001590s00038736.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53120.6 | 3.00E-29 | spermidine synthase 3 |
| NR | XP_006577863.1 | 1.46E-34 | PREDICTED: uncharacterized protein LOC100816988 isoform X2 [Glycine max] |
| COG | YP_007828252.1 | 3.00E-16 | spermidine synthase [Fretibacterium fastidiosum] |
| Swissprot | tr|Q94BN2|SPSY_ARATH | 3.00E-33 | Spermine synthase |
| trEMBL | tr|I1JYT8|I1JYT8_SOYBN | 1.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01590 | 55942 | 56324 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00797 | speE, SRM | EC:2.5.1.16 | Cysteine and methionine metabolism | map00270 |
| Arginine and proline metabolism | map00330 | |||
| beta-Alanine metabolism | map00410 | |||
| Glutathione metabolism | map00480 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001590s00038736.1 | PF01564.12 | Spermine_synth | 13 | 80 | 1.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.361 |
| SRR1783600 | control | 2.865 |
| SRR1783602 | moderate drought stress | 4.610 |
| SRR1811619 | moderate drought stress | 5.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.774 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.667 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.087 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.865 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.274 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.935 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.510 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.815 |
| SRR2967015 | Control (Tissue:root) | 13.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.162 |
| SRR9715740 | Leave | 27.529 |
| SRR9715741 | Leave | 19.619 |
| SRR9715739 | Root | 4.250 |
| SRR9715742 | Root | 7.486 |
| SRR9715743 | Root | 6.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.777 |
| SRR8749028 | MeJA induced 9h | 7.095 |
| SRR8749029 | MeJA induced 9h | 4.032 |
| SRR8749030 | Uninduced | 3.141 |
| SRR8749031 | Uninduced | 1.491 |
| SRR8749032 | Uninduced | 2.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.843 |
| SRR8400027 | Control-Root | 11.408 |