Gene detail information of Glyur001599s00042257.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G43270.10Plant invertase/pectin methylesterase inhibitor superfamily
NRXP_003534983.10PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max]
COGYP_003404589.12.00E-54pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprottr|Q43062|PME_PRUPE0Pectinesterase PPE8B (Precursor)
trEMBLtr|I1L1X0|I1L1X0_SOYBN0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015991984333998-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001599s00042257.1PF04043.10PMEI551671.80E-14
Glyur001599s00042257.1PF01095.14Pectinesterase2145164.10E-144


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.114
SRR1783600control0.104
SRR1783602moderate drought stress0.603
SRR1811619moderate drought stress0.619

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.022
DRR006524Root Summer glycyrrhizin low producing strain0.034
DRR006525Leaf Summer glycyrrhizin high producing strain1.575
DRR006526Leaf Summer glycyrrhizin high producing strain1.570

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.219
SRR2868004Drought Stress(Tissue:root)0.046
SRR2967015Control (Tissue:root)0.105

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.438
SRR9715740Leave1.282
SRR9715741Leave1.095
SRR9715739Root0.324
SRR9715742Root0.483
SRR9715743Root0.177

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.607
SRR8749029MeJA induced 9h0.155
SRR8749030Uninduced1.767
SRR8749031Uninduced0.216
SRR8749032Uninduced0.125

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.013
SRR8400027Control-Root0.404

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved