Gene detail information of Glyur001601s00027175.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53580.11.00E-132diaminopimelate epimerase family protein
NRXP_004492530.10PREDICTED: diaminopimelate epimerase, chloroplastic-like [Cicer arietinum]
COGNP_486088.22.00E-124diaminopimelate epimerase [Nostoc sp. PCC 7120]
Swissprottr|Q9LFG2|DAPF_ARATH0Diaminopimelate epimerase, chloroplastic (Precursor)
trEMBLtr|I1NA10|I1NA10_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016012102825212+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01778dapF EC:5.1.1.7 Biosynthesis of amino acids map01230
Lysine biosynthesismap00300


Gene Ontology

biological_process

GO:0009089  lysine biosynthetic process via diaminopimelate


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0008837  diaminopimelate epimerase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001601s00027175.1PF01678.14DAP_epimerase812012.10E-33
Glyur001601s00027175.1PF01678.14DAP_epimerase2353562.90E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control220.533
SRR1783600control216.369
SRR1783602moderate drought stress139.753
SRR1811619moderate drought stress135.534

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain99.320
DRR006520Root Summer glycyrrhizin high producing strain95.351
DRR006521Root Winter glycyrrhizin high producing strain40.409
DRR006522Root Winter glycyrrhizin high producing strain40.839
DRR006523Root Summer glycyrrhizin low producing strain69.714
DRR006524Root Summer glycyrrhizin low producing strain71.027
DRR006525Leaf Summer glycyrrhizin high producing strain49.672
DRR006526Leaf Summer glycyrrhizin high producing strain44.993

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)274.085
SRR2868004Drought Stress(Tissue:root)162.925
SRR2967015Control (Tissue:root)183.476

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave57.511
SRR9715740Leave38.732
SRR9715741Leave44.126
SRR9715739Root203.718
SRR9715742Root152.214
SRR9715743Root172.336

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h79.093
SRR8749028MeJA induced 9h43.523
SRR8749029MeJA induced 9h65.134
SRR8749030Uninduced62.273
SRR8749031Uninduced53.533
SRR8749032Uninduced80.243

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root176.012
SRR8400027Control-Root149.702

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved