Gene detail information of Glyur001601s00027176.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37430.1 | 3.00E-30 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_010068234.1 | 1.67E-84 | PREDICTED: zinc finger protein 433-like [Eucalyptus grandis] |
| Swissprot | tr|Q9SLD4|ZAT11_ARATH | 7.00E-37 | Zinc finger protein ZAT11 |
| trEMBL | tr|G7L0M7|G7L0M7_MEDTR | 4.00E-74 | Uncharacterized protein {ECO:0000313|EMBL:AFK47111.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01601 | 27267 | 30776 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001601s00027176.1 | PF13912.1 | zf-C2H2_6 | 38 | 61 | 4.20E-08 |
| Glyur001601s00027176.1 | PF13912.1 | zf-C2H2_6 | 86 | 109 | 1.30E-06 |
| Glyur001601s00027176.1 | PF13912.1 | zf-C2H2_6 | 207 | 231 | 2.40E-08 |
| Glyur001601s00027176.1 | PF13912.1 | zf-C2H2_6 | 257 | 282 | 2.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.085 |
| SRR1783600 | control | 0.076 |
| SRR1783602 | moderate drought stress | 0.245 |
| SRR1811619 | moderate drought stress | 0.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 95.152 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 94.966 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 64.030 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 63.648 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.862 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.638 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.577 |
| SRR2967015 | Control (Tissue:root) | 192.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 255.523 |
| SRR9715740 | Leave | 330.042 |
| SRR9715741 | Leave | 267.950 |
| SRR9715739 | Root | 174.603 |
| SRR9715742 | Root | 269.483 |
| SRR9715743 | Root | 236.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 181.916 |
| SRR8749028 | MeJA induced 9h | 74.741 |
| SRR8749029 | MeJA induced 9h | 84.767 |
| SRR8749030 | Uninduced | 144.392 |
| SRR8749031 | Uninduced | 88.143 |
| SRR8749032 | Uninduced | 169.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.417 |
| SRR8400027 | Control-Root | 65.383 |