Gene detail information of Glyur001604s00033250.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G05830.12.00E-135NagB/RpiA/CoA transferase-like superfamily protein
NRKHN12290.10Methylthioribose-1-phosphate isomerase [Glycine soja]
COGYP_003702619.12.00E-93translation initiation factor, aIF-2BI family [Syntrophothermus lipocalidus DSM 12680]
Swissprottr|B9HCR2|MTNA_POPTR0Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_03119}
trEMBLtr|G7IGG7|G7IGG7_MEDTR0Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_03119}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016042781432046-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08963mtnA EC:5.3.1.23 Cysteine and methionine metabolism map00270


Gene Ontology

biological_process

GO:0044237  cellular metabolic process

GO:0044249  cellular biosynthetic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001604s00033250.1PF01008.12IF-2B693696.70E-75


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control96.343
SRR1783600control97.081
SRR1783602moderate drought stress177.857
SRR1811619moderate drought stress176.634

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain120.608
DRR006520Root Summer glycyrrhizin high producing strain119.250
DRR006521Root Winter glycyrrhizin high producing strain55.854
DRR006522Root Winter glycyrrhizin high producing strain54.337
DRR006523Root Summer glycyrrhizin low producing strain93.460
DRR006524Root Summer glycyrrhizin low producing strain92.622
DRR006525Leaf Summer glycyrrhizin high producing strain29.618
DRR006526Leaf Summer glycyrrhizin high producing strain29.703

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.075
SRR2868004Drought Stress(Tissue:root)44.950
SRR2967015Control (Tissue:root)40.647

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.017
SRR9715740Leave26.973
SRR9715741Leave33.417
SRR9715739Root71.890
SRR9715742Root98.483
SRR9715743Root90.120

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h83.740
SRR8749028MeJA induced 9h69.056
SRR8749029MeJA induced 9h74.825
SRR8749030Uninduced86.666
SRR8749031Uninduced62.615
SRR8749032Uninduced86.940

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.748
SRR8400027Control-Root52.254

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved