Gene detail information of Glyur001611s00032565.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01960.14.00E-151RING/U-box superfamily protein
NRXP_004490513.10PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Cicer arietinum]
Swissprottr|Q9LW77|HRD1A_ARATH3.00E-10ERAD-associated E3 ubiquitin-protein ligase HRD1A {ECO:0000305}
trEMBLtr|G7KDC0|G7KDC0_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES98422.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01611268011858-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001611s00032565.1PF13639.1zf-RING_24294684.80E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.839
SRR1783600control14.883
SRR1783602moderate drought stress11.079
SRR1811619moderate drought stress11.049

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.612
DRR006520Root Summer glycyrrhizin high producing strain22.343
DRR006521Root Winter glycyrrhizin high producing strain28.229
DRR006522Root Winter glycyrrhizin high producing strain27.321
DRR006523Root Summer glycyrrhizin low producing strain55.366
DRR006524Root Summer glycyrrhizin low producing strain55.308
DRR006525Leaf Summer glycyrrhizin high producing strain17.405
DRR006526Leaf Summer glycyrrhizin high producing strain17.761

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.959
SRR2868004Drought Stress(Tissue:root)27.130
SRR2967015Control (Tissue:root)22.904

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.716
SRR9715740Leave32.110
SRR9715741Leave67.979
SRR9715739Root14.774
SRR9715742Root41.525
SRR9715743Root35.142

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.546
SRR8749028MeJA induced 9h35.181
SRR8749029MeJA induced 9h49.729
SRR8749030Uninduced41.327
SRR8749031Uninduced63.106
SRR8749032Uninduced52.188

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.195
SRR8400027Control-Root23.472

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved