Gene detail

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Gene detail information of Glyur001611s00032572.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23180.1	9.00E-78	cysteine-rich RLK (RECEPTOR-like protein kinase) 10
NR	KHN01541.1	3.56E-154	Cysteine-rich receptor-like protein kinase 25 [Glycine soja]
COG	YP_001958461.1	3.00E-13	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q8S9L6\|CRK29_ARATH	1.00E-95	Cysteine-rich receptor-like protein kinase 29 (Precursor)
trEMBL	tr\|I1NG71\|I1NG71_SOYBN	1.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G27590.1}

Sequence

Transcript Sequence

>Glyur001611s00032572.1
ATGGAGACGTTTCCGTCAGTTTATTATTGGAACACGAACAACGCGACGGGGGTCGATGAGTATAACCAGGTGCTGGGGAATTTGTTGTATGGGTTGAAGAACACGGCTTCGGGTGGGGACGCGCGTAAGAAGTATGCGACGGGGAATGCGCGTGGAGAGACAGGGGACCTTCGCGCGGCTTTGCTCGTTCTGCAGCGGAGGAGGAAGAAACCGCGATTGGTGGCGGCTAAGAGAGAGGGAGGAGGCTTGTGGTGGTGTGGGGAGCCTATGCGGCCGGTGGCGGTGGGTACTGAAAAGGGGAGATTGTGCGACCTGTTGAGCGTTGGTCATGCTGCTTCAACCTTCTGCTACTGCGTGAGTCTTCTTCGCAGGCGAGACGACGGGGTGAGGAGGAGGGAGGAGTGGCTGGGTGGGTGGGGGAAGAGGAACCCTAGAACAAAATTAGGAGAAGAGGGCAAAAAAACTGAAAAAACGGGTTGGGCTGGTTTGGATCGGATCGGGTTCACGGCACCACCACCGTCACCACCGACTTCGCCCTCCACCAATAGCACTTCTTCCTCAGGAGGGAACAACAATACATCAAAAACTGCCATCGCCATAGCAATCCCAGTTGTTGTTGTTTTGGTGCTCTGTTTCCTCTGCATCTATTTACGGGTGAAGAAGAAGAAGAAGAAGAGAGAAAATTTTCAAAAAGATGATGATGAAATTAAAACTGGTGAGTCATTGCAATTCAACTTTGACACTATACGAATTGCTACAAATGACTTCTCTGATTCCAATAAACTTGGAGAAGGAGGATTTGGAGCTGTTTACTGGGGTAGGCTCTCTAATGGACAAGTAATTGCTGTGAAAAGGTTGTCAATGAACTCTGGCCAGGGAGATTTACTACTTGTCTATGAATTTGTTCCTAATAAAAGTCTTGACTACTTCATATTTGATCCAACAAAGAAAGCACAATTGGATTGGGAAAAACGTTACAAAATCATTGGAGGTATTGCTCGAGGCCTTCTTTATCTTCATGAGGATTCGCGACTGCGCATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGATGAAGAGATGAATCTTAAGATATCAGATTTTGGCATGGCAAGACTGATTGTTATTGTAAGCGGCCAAAAAAATAGTGGCATTCGTCATGGGACAAATGTGGAGGATCTATTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACAGCTAAAAATGTTATAGATCCTTCACTGAACAACAGTTCACGAAATGAAATTATGAGATGCATCCATATTGGTTTGCTCTGTGTTCAAGAAAATGTAGTTAACAGACCAACCATGGCTACCATTGCACTCATGCTAAATAGCTATTCTCTTACTCTCCCAATACCTTCAGAACCTGCATTTTTTCTGGATAGTAGAAATGAAAGTCTTCCAAACATGCAGTATTCATGGGAAGATAATTCAGGGGCAACAAGATCAAGTGAATCCGCGAGTAGGTCAGCTCAAGAATCAGTAAATGAGGCTTCAATTACAGAGCCATACCTTCGTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01611	56245	62085	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001611s00032572.1	PF00069.20	Pkinase	292	382	1.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.209
SRR1783600	control	0.243
SRR1783602	moderate drought stress	0.219
SRR1811619	moderate drought stress	0.121

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.025
DRR006523	Root Summer glycyrrhizin low producing strain	0.336
DRR006524	Root Summer glycyrrhizin low producing strain	0.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.030
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.007

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.780
SRR2868004	Drought Stress(Tissue:root)	5.944
SRR2967015	Control (Tissue:root)	2.141

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.527
SRR9715740	Leave	4.268
SRR9715741	Leave	5.496
SRR9715739	Root	0.486
SRR9715742	Root	0.378
SRR9715743	Root	0.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.889
SRR8749028	MeJA induced 9h	1.458
SRR8749029	MeJA induced 9h	2.465
SRR8749030	Uninduced	4.746
SRR8749031	Uninduced	9.298
SRR8749032	Uninduced	1.894

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.103
SRR8400027	Control-Root	1.173