Gene detail information of Glyur001618s00028950.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G07050.1 | 0 | cycloartenol synthase 1 |
| NR | BAL41371.1 | 0 | lupeol synthase [Glycyrrhiza uralensis] |
| COG | YP_004346025.1 | 2.00E-129 | squalene/oxidosqualene cyclase [Fluviicola taffensis DSM 16823] |
| Swissprot | tr|Q764T8|LUPS_GLYGL | 0 | Lupeol synthase |
| trEMBL | tr|G9MAK0|G9MAK0_GLYUR | 0 | Lupeol synthase {ECO:0000313|EMBL:BAL41371.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01618 | 3493 | 12931 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20659 | LUS | EC:5.4.99.41 | Sesquiterpenoid and triterpenoid biosynthesis | map00909 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001618s00028950.1 | PF00432.16 | Prenyltrans | 113 | 155 | 9.70E-11 |
| Glyur001618s00028950.1 | PF00432.16 | Prenyltrans | 482 | 522 | 1.10E-12 |
| Glyur001618s00028950.1 | PF00432.16 | Prenyltrans | 532 | 581 | 8.80E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.513 |
| SRR1783600 | control | 22.551 |
| SRR1783602 | moderate drought stress | 53.242 |
| SRR1811619 | moderate drought stress | 53.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.046 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.220 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.899 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.299 |
| SRR2967015 | Control (Tissue:root) | 2.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.442 |
| SRR9715740 | Leave | 3.213 |
| SRR9715741 | Leave | 4.116 |
| SRR9715739 | Root | 3.222 |
| SRR9715742 | Root | 4.329 |
| SRR9715743 | Root | 4.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.180 |
| SRR8749028 | MeJA induced 9h | 0.133 |
| SRR8749029 | MeJA induced 9h | 0.112 |
| SRR8749030 | Uninduced | 0.047 |
| SRR8749031 | Uninduced | 0.102 |
| SRR8749032 | Uninduced | 0.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.916 |
| SRR8400027 | Control-Root | 51.079 |