Gene detail information of Glyur001618s00028954.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G04940.10transducin family protein / WD-40 repeat family protein
NRKHN32927.10Putative WD repeat-containing protein [Glycine soja]
COGYP_004050921.12.00E-29wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprottr|Q8H0T9|KTNB1_ARATH2.00E-09Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|I1J4A5|I1J4A5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G00460.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016184445953567-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006364  rRNA processing


cellular_component

GO:0032040  small-subunit processome


molecular_function

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001618s00028954.1PF00400.27WD40981320.0091
Glyur001618s00028954.1PF00400.27WD401491780.0013
Glyur001618s00028954.1PF00400.27WD401902201.80E-06
Glyur001618s00028954.1PF00400.27WD402352670.012
Glyur001618s00028954.1PF00400.27WD404224520.069
Glyur001618s00028954.1PF00400.27WD404995353.50E-11
Glyur001618s00028954.1PF04192.7Utp216348881.50E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.867
SRR1783600control18.977
SRR1783602moderate drought stress16.466
SRR1811619moderate drought stress16.376

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.344
DRR006520Root Summer glycyrrhizin high producing strain26.793
DRR006521Root Winter glycyrrhizin high producing strain32.154
DRR006522Root Winter glycyrrhizin high producing strain31.428
DRR006523Root Summer glycyrrhizin low producing strain23.299
DRR006524Root Summer glycyrrhizin low producing strain23.455
DRR006525Leaf Summer glycyrrhizin high producing strain11.839
DRR006526Leaf Summer glycyrrhizin high producing strain11.628

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.788
SRR2868004Drought Stress(Tissue:root)26.824
SRR2967015Control (Tissue:root)25.205

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.561
SRR9715740Leave19.596
SRR9715741Leave20.440
SRR9715739Root6.067
SRR9715742Root28.586
SRR9715743Root25.662

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h54.238
SRR8749028MeJA induced 9h23.700
SRR8749029MeJA induced 9h27.315
SRR8749030Uninduced9.194
SRR8749031Uninduced5.937
SRR8749032Uninduced6.928

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.230
SRR8400027Control-Root32.528

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved