Gene detail

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Gene detail information of Glyur001623s00036307.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58560.1	2.00E-84	Phosphatidate cytidylyltransferase family protein
NR	AFK48670.1	1.38E-161	unknown [Lotus japonicus]
COG	YP_001518587.1	2.00E-51	phosphatidate cytidylyltransferase [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q2N2K0\|PHYK3_SOYBN	1.00E-157	Probable phytol kinase 3, chloroplastic (Precursor)
trEMBL	tr\|I3T828\|I3T828_LOTJA	5.00E-162	Uncharacterized protein {ECO:0000313\|EMBL:AFK48670.1}

Sequence

Transcript Sequence

>Glyur001623s00036307.1
CCTTTTTCTCTTGTAAAATCAGATGCCAATGTCAATGTGAGTGTGACCTGGGGCACGGGGTAGTCGCTTCCCTCCCCTCGCATTTTCCATTTCACGGTCCCCAAACATGCTTAGGAGCAGCAGCTACAGCGTCATCAGGTTTGACCAACTTGCCCATGTTTCTACTTCTATTCCTCTTCTCTTCACACACTTCAGACCCATTTCCCATTCTTCTCAATTTCTCTCCAATCTCAAACCCACTNCCCCCCTCACTTTTTCTTCTTTCTCCTTCTTCTCTGCCACCACCGCCACCCAACTAACACCACCGCCACGGTCCCCACCTCGCCGGAACCTCGTCTCTGCCTCTGCCACCATGCTGCACCACGACCCTTTTGTCTCTGATATCTATGCCGCCGCTATTTCTGGCGCTGTGGCCTTTTCCTTCCTTAGATTGTGGCAAGAAACTGCAAAGCGTGGGCTCTTCGACCAGAAATTGAATAGGAAACTTGTACATATAAGCATTGGGCTGATATTCATGCTTTGCTGGCCACTATTCAGTACTGACCGATGGGCATCATTCTTTGCTGCTCTTACCCCGGGAGTCAATATAATTCGGATGCTTATTATTGGACTTGGAATATGGAAAGATGAGGCCACAGTGAAATCAATGAGCAGATTTGGAGATTATAGGGAACTTCTTAAGGGACCATTGTATTATGCTGTAACTATTACTGTTGCATCCATAATGTACTGGAGAACTTCGCCCGTTTCCATTGCTGCAATATGTAATCTGTGTGCAGGAGATGGTATGGCTGACATTGTTGGAAGGCGATTTGGTGGTAAAAAGCTACCTTATAACAAAACCAAGTCCTATGCTGGTTCAATTGCAATGGCATCTGCTGGATTCTTGGCTTCTCTTGGGTATATGTGGTATTTTTCCTCATTTGGATTTATTGAGGGAAGCTGGGAATTGGTTCTAGGTTTTCTAGTTGTGTCTGTTGTCACAGCAGTTGTGGAGTCCCTTCCTATCAGCACAAAGCTTGATGACAACCTCACAGTTCCCCTCACTTCCATATTGCTGGGAAGTATAGTCTTCTGATATAGAGCATATTGTAGTAATAAAGCAAGTTAGGAATTAGTTCCTATTTGGTTAGGAATATGTTTATTCTGTAATGTTAAAGCATATTGTAGTCTATCTTGTTGNCAGAAAAAACGGACTGGTGATTATAGTGTAGGACATGTTTGGATTTGCTGGAAGAACTTGCAAAATCATGTTTCCTTCACTCTTTCGTGATTCCACATGAATTTTTTATGTTTAAGTTCTTGAATT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01623	48791	51595	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15892	FOLK	EC:2.7.1.-	Terpenoid backbone biosynthesis	map00900

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001623s00036307.1	PF01148.15	CTP_transf_1	124	298	1.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.690
SRR1783600	control	22.690
SRR1783602	moderate drought stress	18.477
SRR1811619	moderate drought stress	18.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.533
DRR006520	Root Summer glycyrrhizin high producing strain	13.057
DRR006521	Root Winter glycyrrhizin high producing strain	5.924
DRR006522	Root Winter glycyrrhizin high producing strain	5.977
DRR006523	Root Summer glycyrrhizin low producing strain	10.052
DRR006524	Root Summer glycyrrhizin low producing strain	10.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.913
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.747

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	34.429
SRR2868004	Drought Stress(Tissue:root)	34.431
SRR2967015	Control (Tissue:root)	34.509

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	36.580
SRR9715740	Leave	32.925
SRR9715741	Leave	28.033
SRR9715739	Root	23.984
SRR9715742	Root	19.357
SRR9715743	Root	19.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.894
SRR8749028	MeJA induced 9h	18.691
SRR8749029	MeJA induced 9h	14.504
SRR8749030	Uninduced	13.517
SRR8749031	Uninduced	3.416
SRR8749032	Uninduced	5.713

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	34.599
SRR8400027	Control-Root	34.713