Gene detail information of Glyur001626s00034620.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70060.1 | 0 | SIN3-like 4 |
| NR | XP_006585979.1 | 0 | PREDICTED: paired amphipathic helix protein Sin3-like 4-like isoform X2 [Glycine max] |
| Swissprot | tr|O04539|SNL4_ARATH | 0 | Paired amphipathic helix protein Sin3-like 4 |
| trEMBL | tr|K7L9N1|K7L9N1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G40390.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01626 | 12233 | 29399 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001626s00034620.2 | PF02671.16 | PAH | 59 | 105 | 5.30E-17 |
| Glyur001626s00034620.2 | PF02671.16 | PAH | 146 | 191 | 1.40E-21 |
| Glyur001626s00034620.2 | PF02671.16 | PAH | 355 | 400 | 1.80E-19 |
| Glyur001626s00034620.2 | PF08295.7 | Sin3_corepress | 491 | 584 | 1.20E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.596 |
| SRR1783600 | control | 7.584 |
| SRR1783602 | moderate drought stress | 8.007 |
| SRR1811619 | moderate drought stress | 8.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.461 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.411 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.669 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.477 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.113 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.229 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.180 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.407 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.514 |
| SRR2967015 | Control (Tissue:root) | 17.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.284 |
| SRR9715740 | Leave | 11.181 |
| SRR9715741 | Leave | 10.157 |
| SRR9715739 | Root | 1.170 |
| SRR9715742 | Root | 9.483 |
| SRR9715743 | Root | 8.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.386 |
| SRR8749028 | MeJA induced 9h | 15.696 |
| SRR8749029 | MeJA induced 9h | 7.499 |
| SRR8749030 | Uninduced | 7.257 |
| SRR8749031 | Uninduced | 7.324 |
| SRR8749032 | Uninduced | 4.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.085 |
| SRR8400027 | Control-Root | 15.208 |