Gene detail information of Glyur001630s00027436.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07810.1 | 4.00E-40 | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein |
| NR | KHN06903.1 | 1.22E-61 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Glycine soja] |
| COG | YP_002925001.1 | 1.00E-05 | RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] |
| trEMBL | tr|V7CHJ6|V7CHJ6_PHAVU | 1.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:ESW29647.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01630 | 1946 | 4156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001630s00027436.1 | PF00176.18 | SNF2_N | 8 | 57 | 5.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.860 |
| SRR1783600 | control | 0.741 |
| SRR1783602 | moderate drought stress | 0.529 |
| SRR1811619 | moderate drought stress | 0.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.876 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.640 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.560 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.432 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.297 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.741 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.159 |
| SRR2967015 | Control (Tissue:root) | 2.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.897 |
| SRR9715740 | Leave | 0.965 |
| SRR9715741 | Leave | 1.965 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.111 |
| SRR9715743 | Root | 1.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.527 |
| SRR8749028 | MeJA induced 9h | 4.667 |
| SRR8749029 | MeJA induced 9h | 0.589 |
| SRR8749030 | Uninduced | 0.256 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.499 |
| SRR8400027 | Control-Root | 3.565 |