Gene detail information of Glyur001630s00027439.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G07830.11.00E-131glucuronidase 2
NRXP_003527099.10PREDICTED: heparanase-like protein 1-like isoform X1 [Glycine max]
Swissprottr|Q9FF10|HPSE1_ARATH3.00E-161Heparanase-like protein 1 (Precursor)
trEMBLtr|K7KW31|K7KW31_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G21551.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016301515019073+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH79


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07964HPSE EC:3.2.1.166 Glycosaminoglycan degradation map00531
Proteoglycans in cancermap05205


Gene Ontology

cellular_component

GO:0016020  membrane


molecular_function

GO:0016798  hydrolase activity, acting on glycosyl bonds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001630s00027439.1PF03662.9Glyco_hydro_79n353472.40E-149


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.775
SRR1783600control22.712
SRR1783602moderate drought stress10.826
SRR1811619moderate drought stress10.591

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.887
DRR006520Root Summer glycyrrhizin high producing strain11.632
DRR006521Root Winter glycyrrhizin high producing strain2.283
DRR006522Root Winter glycyrrhizin high producing strain2.145
DRR006523Root Summer glycyrrhizin low producing strain9.000
DRR006524Root Summer glycyrrhizin low producing strain8.993
DRR006525Leaf Summer glycyrrhizin high producing strain23.826
DRR006526Leaf Summer glycyrrhizin high producing strain23.666

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.635
SRR2868004Drought Stress(Tissue:root)30.230
SRR2967015Control (Tissue:root)35.099

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.048
SRR9715740Leave11.820
SRR9715741Leave17.845
SRR9715739Root3.716
SRR9715742Root10.505
SRR9715743Root9.098

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.901
SRR8749028MeJA induced 9h49.923
SRR8749029MeJA induced 9h38.658
SRR8749030Uninduced100.332
SRR8749031Uninduced135.014
SRR8749032Uninduced87.070

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.149
SRR8400027Control-Root40.790

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved