Gene detail information of Glyur001630s00027444.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26610.1 | 8.00E-20 | C2H2-like zinc finger protein |
| NR | KEH31995.1 | 1.84E-118 | C2H2-type zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q9SLD4|ZAT11_ARATH | 1.00E-08 | Zinc finger protein ZAT11 |
| trEMBL | tr|A0A072V1J8|A0A072V1J8_MEDTR | 7.00E-119 | C2H2-type zinc finger protein {ECO:0000313|EMBL:KEH31995.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01630 | 41208 | 42707 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001630s00027444.1 | PF13912.1 | zf-C2H2_6 | 10 | 32 | 6.00E-06 |
| Glyur001630s00027444.1 | PF13912.1 | zf-C2H2_6 | 105 | 126 | 0.0006 |
| Glyur001630s00027444.1 | PF13912.1 | zf-C2H2_6 | 366 | 389 | 1.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.097 |
| SRR1783600 | control | 0.074 |
| SRR1783602 | moderate drought stress | 0.101 |
| SRR1811619 | moderate drought stress | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.434 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.430 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.409 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.045 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.367 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.253 |
| SRR2967015 | Control (Tissue:root) | 1.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.044 |
| SRR9715739 | Root | 0.005 |
| SRR9715742 | Root | 0.089 |
| SRR9715743 | Root | 0.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.539 |
| SRR8400027 | Control-Root | 0.540 |