Gene detail information of Glyur001631s00034409.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18380.12.00E-112sequence-specific DNA binding transcription factors;sequence-specific DNA binding
NRXP_003628534.10hypothetical protein MTR_8g061040 [Medicago truncatula]
Swissprottr|Q8RWJ7|SHH2_ARATH1.00E-147Protein SAWADEE HOMEODOMAIN HOMOLOG 2
trEMBLtr|G7LDQ2|G7LDQ2_MEDTR0Sequence-specific DNA-binding transcription factor {ECO:0000313|EMBL:AET03010.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016314403061767-


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001631s00034409.1PF00046.24Homeobox13740.00016


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.902
SRR1783600control6.731
SRR1783602moderate drought stress8.275
SRR1811619moderate drought stress8.589

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.986
DRR006520Root Summer glycyrrhizin high producing strain6.622
DRR006521Root Winter glycyrrhizin high producing strain10.412
DRR006522Root Winter glycyrrhizin high producing strain10.775
DRR006523Root Summer glycyrrhizin low producing strain8.454
DRR006524Root Summer glycyrrhizin low producing strain8.648
DRR006525Leaf Summer glycyrrhizin high producing strain9.023
DRR006526Leaf Summer glycyrrhizin high producing strain8.838

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.345
SRR2868004Drought Stress(Tissue:root)11.430
SRR2967015Control (Tissue:root)10.887

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.251
SRR9715740Leave11.838
SRR9715741Leave9.510
SRR9715739Root6.091
SRR9715742Root7.702
SRR9715743Root6.294

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.398
SRR8749028MeJA induced 9h14.273
SRR8749029MeJA induced 9h22.435
SRR8749030Uninduced7.861
SRR8749031Uninduced7.899
SRR8749032Uninduced8.696

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.402
SRR8400027Control-Root7.383

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved