Gene detail information of Glyur001636s00039703.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53000.1 | 7.00E-123 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | KEH41941.1 | 0 | 3-deoxy-manno-octulosonate cytidylyltransferase [Medicago truncatula] |
| COG | YP_003709470.1 | 3.00E-75 | 3-deoxy-manno-octulosonate cytidylyltransferase [Waddlia chondrophila WSU 86-1044] |
| Swissprot | tr|Q9C920|KDSB_ARATH | 3.00E-170 | 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial (Precursor) |
| trEMBL | tr|A0A072VK14|A0A072VK14_MEDTR | 0 | 3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000313|EMBL:KEH41941.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01636 | 35479 | 45601 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00979 | kdsB | EC:2.7.7.38 | Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001636s00039703.1 | PF02348.14 | CTP_transf_3 | 55 | 264 | 2.50E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.809 |
| SRR1783600 | control | 40.193 |
| SRR1783602 | moderate drought stress | 24.182 |
| SRR1811619 | moderate drought stress | 23.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.103 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.173 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.885 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.281 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.164 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.362 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 47.779 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.576 |
| SRR2967015 | Control (Tissue:root) | 35.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.003 |
| SRR9715740 | Leave | 16.621 |
| SRR9715741 | Leave | 18.229 |
| SRR9715739 | Root | 17.619 |
| SRR9715742 | Root | 24.749 |
| SRR9715743 | Root | 23.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.702 |
| SRR8749028 | MeJA induced 9h | 28.836 |
| SRR8749029 | MeJA induced 9h | 29.539 |
| SRR8749030 | Uninduced | 20.305 |
| SRR8749031 | Uninduced | 10.467 |
| SRR8749032 | Uninduced | 12.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 34.700 |
| SRR8400027 | Control-Root | 37.286 |