Gene detail information of Glyur001637s00043813.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G38600.13.00E-09HEAT repeat ;HECT-domain (ubiquitin-transferase)
NRXP_006486747.14.37E-12PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Citrus sinensis]
Swissprottr|Q6WWW4|UPL3_ARATH2.00E-10E3 ubiquitin-protein ligase UPL3
trEMBLtr|B4XH13|B4XH13_SOYBN3.00E-12Putative HECT ubiquitin-protein ligase 3 {ECO:0000313|EMBL:ABX10827.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016374257648325-


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10590TRIP12 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001637s00043813.1PF00632.20HECT921298.80E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.193
SRR1783600control1.523
SRR1783602moderate drought stress0.347
SRR1811619moderate drought stress0.487

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.127
DRR006520Root Summer glycyrrhizin high producing strain0.992
DRR006521Root Winter glycyrrhizin high producing strain0.556
DRR006522Root Winter glycyrrhizin high producing strain1.595
DRR006523Root Summer glycyrrhizin low producing strain1.017
DRR006524Root Summer glycyrrhizin low producing strain0.385
DRR006525Leaf Summer glycyrrhizin high producing strain1.275
DRR006526Leaf Summer glycyrrhizin high producing strain1.108

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.431
SRR2868004Drought Stress(Tissue:root)3.536
SRR2967015Control (Tissue:root)4.006

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.413
SRR9715740Leave0.229
SRR9715741Leave0.499
SRR9715739Root0.329
SRR9715742Root0.445
SRR9715743Root0.068

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.978
SRR8749028MeJA induced 9h2.341
SRR8749029MeJA induced 9h3.707
SRR8749030Uninduced2.174
SRR8749031Uninduced0.934
SRR8749032Uninduced2.654

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.010
SRR8400027Control-Root1.538

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved