Gene detail information of Glyur001639s00029616.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G60550.12.00E-141enoyl-CoA hydratase/isomerase D
NRKEH20043.101,4-dihydroxy-2-naphthoyl-CoA synthase [Medicago truncatula]
COGYP_002019238.12.00E-129naphthoate synthase [Pelodictyon phaeoclathratiforme BU-1]
Swissprottr|Q8GYN9|MENB_ARATH3.00E-1771,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal
trEMBLtr|A0A072TT65|A0A072TT65_MEDTR01,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000313|EMBL:KEH20043.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016392133525699-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01661menB EC:4.1.3.36 Ubiquinone and other terpenoid-quinone biosynthesis map00130


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009234  menaquinone biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008935  1,4-dihydroxy-2-naphthoyl-CoA synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001639s00029616.2PF00378.15ECH881491.90E-14
Glyur001639s00029616.2PF00378.15ECH1642755.60E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.884
SRR1783600control8.024
SRR1783602moderate drought stress13.810
SRR1811619moderate drought stress13.840

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.100
DRR006520Root Summer glycyrrhizin high producing strain24.201
DRR006521Root Winter glycyrrhizin high producing strain31.540
DRR006522Root Winter glycyrrhizin high producing strain30.407
DRR006523Root Summer glycyrrhizin low producing strain21.019
DRR006524Root Summer glycyrrhizin low producing strain21.308
DRR006525Leaf Summer glycyrrhizin high producing strain93.898
DRR006526Leaf Summer glycyrrhizin high producing strain94.163

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.319
SRR2868004Drought Stress(Tissue:root)16.815
SRR2967015Control (Tissue:root)15.871

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave52.537
SRR9715740Leave58.017
SRR9715741Leave49.971
SRR9715739Root3.978
SRR9715742Root6.190
SRR9715743Root5.249

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.844
SRR8749028MeJA induced 9h13.877
SRR8749029MeJA induced 9h9.501
SRR8749030Uninduced24.852
SRR8749031Uninduced16.408
SRR8749032Uninduced18.292

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.973
SRR8400027Control-Root13.621

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved