Gene detail information of Glyur001639s00029618.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60590.1 | 0 | Pectin lyase-like superfamily protein |
| NR | XP_003531999.2 | 0 | PREDICTED: polygalacturonase At1g48100 isoform 1 [Glycine max] |
| COG | NP_693009.1 | 2.00E-32 | hypothetical protein OB2088 [Oceanobacillus iheyensis HTE831] |
| Swissprot | tr|Q949Z1|PGLR4_ARATH | 4.00E-122 | Polygalacturonase At1g48100 (Precursor) |
| trEMBL | tr|I1KXE1|I1KXE1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G39340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01639 | 28423 | 34068 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001639s00029618.1 | PF12708.2 | Pectate_lyase_3 | 111 | 137 | 2.00E-07 |
| Glyur001639s00029618.1 | PF00295.12 | Glyco_hydro_28 | 141 | 221 | 9.50E-11 |
| Glyur001639s00029618.1 | PF00295.12 | Glyco_hydro_28 | 260 | 477 | 1.10E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.122 |
| SRR1783600 | control | 3.095 |
| SRR1783602 | moderate drought stress | 1.126 |
| SRR1811619 | moderate drought stress | 1.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.032 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.041 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.300 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.342 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.788 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.971 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.145 |
| SRR2967015 | Control (Tissue:root) | 1.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.699 |
| SRR9715740 | Leave | 0.106 |
| SRR9715741 | Leave | 2.557 |
| SRR9715739 | Root | 0.446 |
| SRR9715742 | Root | 1.159 |
| SRR9715743 | Root | 0.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.148 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 34.626 |
| SRR8400027 | Control-Root | 23.326 |