Gene detail

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Gene detail information of Glyur001642s00033444.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G10170.1	NF-X-like 1
NR	XP_004512772.1	PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Cicer arietinum]
Swissprot	tr\|Q9SY59\|NFXL1_ARATH	NF-X1-type zinc finger protein NFXL1
trEMBL	tr\|G7KQB2\|G7KQB2_MEDTR	NF-X1-type zinc finger protein NFXL1 {ECO:0000313\|EMBL:AES76092.1}

Sequence

Transcript Sequence

>Glyur001642s00033444.1
ATGGAACCCCTGTGTTGTTCGCAGATCTGCGATGAGAAAAGGGAAGTGAGGTTTTTCTTTGATTCTGCGGTTTCCTTTGACAACATCATTCACAAAAACAACAAACGTAGCATTCCGAAGAAAAGTGCTGTTTCTGAAAATCTTCTTCCCCTTCCCCTCGCCCATCATCAGAAGGAACATAGAAAAGGTATGAGCTTGCAAGTAAGAAGAGAGAGAAGGGAATGGTCGAGGGCTCCATCACAAACTGCTCCTCGTCAAGAATGGGTTCCTAAAGGGAGTGGAGGAGCATCCAGCACTGTTGTGCAGCCATTGGATTCGAACTCTCATCACAATGCTGATGCTGGTGGTAGCTCCAATCAAGGGGTTGGGGTTGTGGCCGCGGCTCGCCGGAGAAGTAATAACCATCATGGTGCTCATAGGGTGGAAAGGGAAAAGGAGAAAGGGAGGGGTGGTGGTGGGAATAAGGTTGGGAAGGAATTGGGGGCATTGAGGGACTCTAGTTTGCCTCAATTGGTGCAAGAGATTCAGGAGAAGCTCANGAGAGGAACCGTGGAGTGCATGATTTGCTATGACATGGTTCGGAGGTCCGCTCCCGTCTGGTCTTGCTCCAGTTGTTACTCCATCTTCCACCTGAATTGCATCAAGAAGTGGGCTCGTGCGCCCACCTCNGTTGATCTGTCTACTGAGAAGAATCAAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTCTGTGCAGCTTACGTCTTCGAAGGAGATCAGATATGTTTGTTTCTGTGGGAAGAGGATAGACCCTCCATCTGATTTGTATCTCACGCCACATTCGTGTGGGGAGCCATGTGGGAANCCTCTTGAGAGGGAGGTGTTGGTTGCTGGAGGGAGTAAGGATGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCGGGTCCATGTCCTCCTTGTAGANCATTTGCCCCTCCTCGTTTGTGCCCTTGCGGGAAGAAGACAATCACCACCCGTTGCTCCGATCGGCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGATAGACTTCTTGAATGCGGACGTCATCGCTGTCAACGTATTTGTCATGTGGGTCCTTGTGATCCTTGTCAGGTNCTTATCAATGCCTCTTGCTTTTGCAGTAAAATGACTGAGGTTATTCTTTGTGGGGACATGGCTGTGAAGGGCGAATTANAAGCAGAAGGTGGAGTTTTTTGCTGTGGTTTCAATTGTGGAAAGAAACTTAGTTGTGGTAATCATACCTGCAGCGAGGTTTGTCATCCTGGCAGCTGTGGGGAATGTGAGTTTTTACCTAGCCGGGTTAAGACATGCTGTTGTGGAAAATCAAGGTTGGAGGAGGAGCGTCAGAGTTGTTTGGATGCAATACCTACCTGCTCACAGGTATGTGGCAAGCTCCTTCATTGTGGGATACATACTTGTAAGGAGACATGTCATGTTGGGGAATGTCCACCATGTAAGGTTCTAGTTTCACAGAAGTGTCGTTGTGGCTCGACTTCCCGAACNGTGGAGTGCTACAAGACAATAATGGAGAATCAGAAGTTTACCTGTGAAAAGCCTTGTGGGCACAAAAAGAATTGNGGAAGGCATCGGTGTAGTGAGAAGTGTTGTCCATTGTCTAATCCAAATAATAGCTTGAGTGGGGATTGGGATCCTCATTTTTGTTCCATGCCATGTGGGAAGAAGCTAAGATGTGGCCAGCATGCGTGTGAATCNCTGTGCCACAGTGGTCATTGCCCACCTTGTCTTGAAACAATCTTTACTGATTTGGCATGTGCTTGTGGTAGGACTTCAATTCCTCCTCCTCTACCTTGCGGTACACCGCCTCCTTCATGTCAGCTTCCTTGTTCAGTTCCTCAGCCATGTGGTCATTCAGGCTCGCATAGTTGCCATTTCGGAGACTGCCCTCCTTGTTCNGTGCCCGTATCAAAAGAATGTGTTGGTGGGCATGTCATTCTCAGGAACATACCTTGNGGTTCAAAGGATATAAGGTGCAATAATCCCTGTGGGAAGACCAGACAGTGTGGTCTACATGCATGTGGGAGAACATGTCACCCCCCACCTTGTGATAATCTACCTGGTTATGTGCAAGGTTTCCAGGCACCATGTGGGCAGACATGTGGTGCTCCGAGGAGAGGCTGCCGGCATACATGTATGGCTCNATGTCACCCTTCATCTCCTTGCCCAGATATAAGATGTGAATTCCCNGTTACAATTACTTGTTCTTGTGGTCGCATAACGGCAAATGTTCCTTGCGATGTTGGTGGTANCAATAGTAATTATAATGCTGATGCCATACATGAAGCTTCCATCATTCAGAAATTGCCTGGGCCACTTCAACCAGTTGAAGCAAATGGCAAGAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGACGAGGAATGTGCTAAGTTGGAGCGTAAAAGGCTTCTTGCCGATGCTTTTGACATCACTCCAAGTCTGGATTCCCTCCATTTTGGTGAGAATTTTGTTTCATCTGAATTGCTTTNTGACATGTTTAGACGTGATCCGAAATGGGTTTTGGCTGTTGAGGAGAGATGCAAAATTNTAGTACTCGGCAAGAGCAAAGGAANTGCACATGGTTTAAAAGTCCATGTCTTTTGTCCTATGCTAAAGGATAAAAGAGATGCCGTGAGATTGATCGCTGAAAGATGGAAGCTCGCAGTGAATGCTGCTGGTTGGGAGCCAAAGCGCTTCATCGTAATTTCTGTTACCCCAAAATCGAAGGCCCCGGCTCGTGTGCTCGGGGTTAAGGGTACCACAACTTTAAATGCACCCCTTCCTACTGCATTNGATCCCTTGGTAGATATGGACCCAAGGCTTGTTGTCTCGTTTCCAGACTTGCCAAGGGATGCTGATATTAGTGCCTTGGTGTTGAGGTTTGGCGGCGAATGTGAGCTTGTTTGGTTGAATGACAAGAATGCTTTGGCTGTTTTTCATGATCCCGCCCGAGCTGCAACCGCAATGAGGAGGTTGGATCACGGAACAGTTTATCAGGGTGCTGTTTCGGTTGTCCAGAATATCGGGGCGGCATCGGNGGCATCTTCAGCTACTAATGCCTGGGGAGGAGGTGGGACAATGAAAGAGGGAGGAGGAGCACTGTCAGNATTGAAAGGTAATCCATGGAAAAAGGCTGTGGTTCAAGAGCCTGGTTGGAAAGAAGATTCTTGGGGTGATGAAGAATGGGCCACTGGTTCTTCTGCAAATATCCAGCCATCTGTTTGGAAGAAAGAAGGACCGATAACCGCTTCGTTAAATCCTTGGAATGTCTTAGACCAGGAATCGAGTTCNAGTTCATCGTCTACAACTGTTACAGCTGAAGCTTCTGGAAAACACACCCAAACAAGTGCTGTCTCAAGATTGGAGTCTTGGGCAGGTAGCTCAAATGAAGGGGGGAACAAACTTGGAGGAAACTTCAATGCAGCAGAAGCTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGAGGGAAGAAAACAAAAAATATGAACAACAAACAAATACACCATGTCTAAGGCCTTTTTGCCTTGTTTTATCAGTTTTGGCTAGTTGAGGTCATTTTCNTCATTTTAGGTTAATATTTTAAATTTCAAAGTGATTGGATTCCTTATACCCANATTGAGTGATGGGGTATCAGGCTATAGGGAAAAAACGCTTTTTTTTTTGGGTAAAAGGGTTACATTCTGTCAAGGAACATTGAGTTTGATTTGAAAATCGTTTTGAAAGTTGGTCTAGTTTTGATTTCTAGTCAGTAATTGAAGATATCACATTAAGTCCTTGCCAATCCTAACTTATATATGATGTCATTGACAAAGTTCA

Protein Sequence

>Glyur001642s00033444.1
MEPLCCSQICDEKREVRFFFDSAVSFDNIIHKNNKRSIPKKSAVSENLLPLPLAHHQKEHRKGMSLQVRRERREWSRAPSQTAPRQEWVPKGSGGASSTVVQPLDSNSHHNADAGGSSNQGVGVVAAARRRSNNHHGAHRVEREKEKGRGGGGNKVGKELGALRDSSLPQLVQEIQEKLXRGTVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSVDLSTEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRIDPPSDLYLTPHSCGEPCGXPLEREVLVAGGSKDDLCPHVCVLQCHPGPCPPCRXFAPPRLCPCGKKTITTRCSDRQSVLTCGQRCDRLLECGRHRCQRICHVGPCDPCQVLINASCFCSKMTEVILCGDMAVKGELXAEGGVFCCGFNCGKKLSCGNHTCSEVCHPGSCGECEFLPSRVKTCCCGKSRLEEERQSCLDAIPTCSQVCGKLLHCGIHTCKETCHVGECPPCKVLVSQKCRCGSTSRTVECYKTIMENQKFTCEKPCGHKKNXGRHRCSEKCCPLSNPNNSLSGDWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLACACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPXGSKDIRCNNPCGKTRQCGLHACGRTCHPPPCDNLPGYVQGFQAPCGQTCGAPRRGCRHTCMAXCHPSSPCPDIRCEFPVTITCSCGRITANVPCDVGGXNSNYNADAIHEASIIQKLPGPLQPVEANGKKVPLGQRKLMCDEECAKLERKRLLADAFDITPSLDSLHFGENFVSSELLXDMFRRDPKWVLAVEERCKIXVLGKSKGXAHGLKVHVFCPMLKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISVTPKSKAPARVLGVKGTTTLNAPLPTAXDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSVVQNIGAASXASSATNAWGGGGTMKEGGGALSXLKGNPWKKAVVQEPGWKEDSWGDEEWATGSSANIQPSVWKKEGPITASLNPWNVLDQESSSSSSSTTVTAEASGKHTQTSAVSRLESWAGSSNEGGNKLGGNFNAAEASEVVDDWEKAYE

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01642	26646	31162	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-X1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0000166 nucleotide binding GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0005515 protein binding GO:0008270 zinc ion binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001642s00033444.1	PF01422.12	zf-NF-X1	353	371	1.80E-05
Glyur001642s00033444.1	PF01422.12	zf-NF-X1	475	493	1.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.064
SRR1783600	control	4.122
SRR1783602	moderate drought stress	3.705
SRR1811619	moderate drought stress	3.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.555
DRR006520	Root Summer glycyrrhizin high producing strain	5.280
DRR006521	Root Winter glycyrrhizin high producing strain	9.233
DRR006522	Root Winter glycyrrhizin high producing strain	9.172
DRR006523	Root Summer glycyrrhizin low producing strain	6.104
DRR006524	Root Summer glycyrrhizin low producing strain	6.056
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.177
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.051

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.753
SRR2868004	Drought Stress(Tissue:root)	11.407
SRR2967015	Control (Tissue:root)	10.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.614
SRR9715740	Leave	7.971
SRR9715741	Leave	6.146
SRR9715739	Root	4.846
SRR9715742	Root	6.741
SRR9715743	Root	7.970

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.898
SRR8749028	MeJA induced 9h	7.258
SRR8749029	MeJA induced 9h	7.440
SRR8749030	Uninduced	7.362
SRR8749031	Uninduced	9.537
SRR8749032	Uninduced	9.333

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.026
SRR8400027	Control-Root	7.979