Gene detail information of Glyur001642s00033445.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G37600.11.00E-115glutamine synthase clone R1
NRXP_004512771.16.00E-148PREDICTED: glutamine synthetase nodule isozyme-like [Cicer arietinum]
COGYP_008733525.11.00E-47glutamate--ammonia ligase [Actinoplanes friuliensis DSM 7358]
Swissprottr|Q43785|GLNA3_MEDSA7.00E-150Glutamine synthetase nodule isozyme
trEMBLtr|Q9SWY8|Q9SWY8_CANLI2.00E-148Glutamine synthetase {ECO:0000256|RuleBase:RU004356}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016424182345512+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01915glnA, GLUL EC:6.3.1.2 Biosynthesis of amino acids map01230
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Two-component systemmap02020
Glutamatergic synapsemap04724
GABAergic synapsemap04727


Gene Ontology

biological_process

GO:0006542  glutamine biosynthetic process

GO:0006807  nitrogen compound metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004356  glutamate-ammonia ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001642s00033445.1PF03951.14Gln-synt_N19911.20E-07
Glyur001642s00033445.1PF00120.19Gln-synt_C981912.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.033
SRR1783602moderate drought stress1.793
SRR1811619moderate drought stress1.735

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.568
DRR006520Root Summer glycyrrhizin high producing strain0.582
DRR006521Root Winter glycyrrhizin high producing strain0.098
DRR006522Root Winter glycyrrhizin high producing strain0.031
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain1.586
DRR006526Leaf Summer glycyrrhizin high producing strain1.621

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.000
SRR2868004Drought Stress(Tissue:root)0.000
SRR2967015Control (Tissue:root)0.000

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.677
SRR9715740Leave3.956
SRR9715741Leave3.427
SRR9715739Root3.612
SRR9715742Root3.275
SRR9715743Root2.183

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.031
SRR8749028MeJA induced 9h0.020
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.017

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.216
SRR8400027Control-Root6.844

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved