Gene detail information of Glyur001643s00028421.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49230.1 | 5.00E-52 | RING/U-box superfamily protein |
| NR | XP_003630197.1 | 5.05E-104 | RING finger protein [Medicago truncatula] |
| Swissprot | tr|Q6NQG7|ATL78_ARATH | 2.00E-71 | RING-H2 finger protein ATL78 |
| trEMBL | tr|I1KTF2|I1KTF2_SOYBN | 2.00E-108 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01643 | 35782 | 36531 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001643s00028421.1 | PF13639.1 | zf-RING_2 | 138 | 181 | 4.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.471 |
| SRR1783600 | control | 9.751 |
| SRR1783602 | moderate drought stress | 14.353 |
| SRR1811619 | moderate drought stress | 13.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 49.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.630 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.563 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.248 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 140.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 139.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.641 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.973 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.415 |
| SRR2967015 | Control (Tissue:root) | 67.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.316 |
| SRR9715740 | Leave | 0.054 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 8.302 |
| SRR9715742 | Root | 2.782 |
| SRR9715743 | Root | 4.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.171 |
| SRR8749028 | MeJA induced 9h | 0.126 |
| SRR8749029 | MeJA induced 9h | 0.073 |
| SRR8749030 | Uninduced | 1.952 |
| SRR8749031 | Uninduced | 0.862 |
| SRR8749032 | Uninduced | 0.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.376 |
| SRR8400027 | Control-Root | 18.272 |