Gene detail information of Glyur001645s00024575.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20320.10dicer-like 4
NRXP_006594228.10PREDICTED: dicer-like protein 4-like isoform X2 [Glycine max]
COGYP_003483474.16.00E-26DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469]
Swissprottr|P84634|DCL4_ARATH0Dicer-like protein 4
trEMBLtr|K7M015|K7M015_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G22450.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0164511914202+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11592DICER1, DCR1 EC:3.1.26.- MicroRNAs in cancer map05206


Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016891  endoribonuclease activity, producing 5'-phosphomonoesters


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001645s00024575.2PF00270.24DEAD512132.40E-15
Glyur001645s00024575.2PF00271.26Helicase_C4525102.20E-14
Glyur001645s00024575.2PF03368.9Dicer_dimer5776641.30E-23
Glyur001645s00024575.2PF02170.17PAZ8689881.20E-10
Glyur001645s00024575.2PF00636.21Ribonuclease_3103311644.50E-21
Glyur001645s00024575.2PF00636.21Ribonuclease_3124013494.80E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.513
SRR1783600control12.376
SRR1783602moderate drought stress13.221
SRR1811619moderate drought stress13.100

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.608
DRR006520Root Summer glycyrrhizin high producing strain11.619
DRR006521Root Winter glycyrrhizin high producing strain4.240
DRR006522Root Winter glycyrrhizin high producing strain4.125
DRR006523Root Summer glycyrrhizin low producing strain11.700
DRR006524Root Summer glycyrrhizin low producing strain11.743
DRR006525Leaf Summer glycyrrhizin high producing strain11.520
DRR006526Leaf Summer glycyrrhizin high producing strain11.606

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.166
SRR2868004Drought Stress(Tissue:root)17.511
SRR2967015Control (Tissue:root)18.995

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.299
SRR9715740Leave11.931
SRR9715741Leave13.331
SRR9715739Root2.086
SRR9715742Root16.743
SRR9715743Root14.243

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.505
SRR8749028MeJA induced 9h11.987
SRR8749029MeJA induced 9h7.795
SRR8749030Uninduced1.411
SRR8749031Uninduced0.579
SRR8749032Uninduced1.123

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.381
SRR8400027Control-Root21.661

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved