Gene detail information of Glyur001645s00024576.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G07690.10Minichromosome maintenance (MCM2/3/5) family protein
NRXP_004508387.10PREDICTED: DNA replication licensing factor mcm5-A-like [Cicer arietinum]
COGYP_003649354.11.00E-127replicative DNA helicase Mcm [Thermosphaera aggregans DSM 11486]
Swissprottr|O80786|MCM5_ARATH0DNA replication licensing factor MCM5
trEMBLtr|B3GNI3|B3GNI3_PEA0Minichromosome maintenance 5 protein {ECO:0000313|EMBL:ACD87452.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016451503020931+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02209MCM5, CDC46 EC:3.6.4.12 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006270  DNA replication initiation


cellular_component

GO:0005634  nucleus

GO:0042555  MCM complex


molecular_function

GO:0003677  DNA binding

GO:0003678  DNA helicase activity

GO:0003682  chromatin binding

GO:0003688  DNA replication origin binding

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001645s00024576.1PF14551.1MCM_N341531.60E-15
Glyur001645s00024576.1PF00493.18MCM3156471.30E-137


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.269
SRR1783600control10.299
SRR1783602moderate drought stress4.751
SRR1811619moderate drought stress4.707

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.292
DRR006520Root Summer glycyrrhizin high producing strain6.244
DRR006521Root Winter glycyrrhizin high producing strain9.166
DRR006522Root Winter glycyrrhizin high producing strain8.899
DRR006523Root Summer glycyrrhizin low producing strain6.070
DRR006524Root Summer glycyrrhizin low producing strain5.873
DRR006525Leaf Summer glycyrrhizin high producing strain1.412
DRR006526Leaf Summer glycyrrhizin high producing strain1.400

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.824
SRR2868004Drought Stress(Tissue:root)12.556
SRR2967015Control (Tissue:root)11.714

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.855
SRR9715740Leave0.550
SRR9715741Leave1.343
SRR9715739Root1.242
SRR9715742Root4.217
SRR9715743Root2.897

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h60.356
SRR8749028MeJA induced 9h33.167
SRR8749029MeJA induced 9h40.953
SRR8749030Uninduced11.056
SRR8749031Uninduced13.019
SRR8749032Uninduced16.730

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.560
SRR8400027Control-Root17.086

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved