Gene detail information of Glyur001645s00024582.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G19810.12.00E-75Glycosyl hydrolase family protein with chitinase insertion domain
NRKEH32181.10cysteine-rich RLK (receptor-like kinase) protein [Medicago truncatula]
COGYP_007146068.16.00E-37chitinase [Cylindrospermum stagnale PCC 7417]
Swissprottr|O64781|Y1639_ARATH7.00E-14G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 (Precursor)
trEMBLtr|A0A072US50|A0A072US50_MEDTR0Cysteine-rich RLK (Receptor-like kinase) protein {ECO:0000313|EMBL:KEH32181.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016454432262570-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006032  chitin catabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568  chitinase activity

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001645s00024582.2PF00704.23Glyco_hydro_18332782.80E-51
Glyur001645s00024582.2PF00704.23Glyco_hydro_185208367.70E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.180
SRR1783600control1.200
SRR1783602moderate drought stress1.463
SRR1811619moderate drought stress1.397

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.818
DRR006520Root Summer glycyrrhizin high producing strain1.637
DRR006521Root Winter glycyrrhizin high producing strain4.754
DRR006522Root Winter glycyrrhizin high producing strain4.715
DRR006523Root Summer glycyrrhizin low producing strain2.866
DRR006524Root Summer glycyrrhizin low producing strain2.742
DRR006525Leaf Summer glycyrrhizin high producing strain0.511
DRR006526Leaf Summer glycyrrhizin high producing strain0.521

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.336
SRR2868004Drought Stress(Tissue:root)1.855
SRR2967015Control (Tissue:root)2.271

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.526
SRR9715740Leave0.657
SRR9715741Leave1.175
SRR9715739Root0.948
SRR9715742Root1.179
SRR9715743Root0.861

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.200
SRR8749028MeJA induced 9h0.460
SRR8749029MeJA induced 9h0.219
SRR8749030Uninduced0.338
SRR8749031Uninduced0.135
SRR8749032Uninduced0.101

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.055
SRR8400027Control-Root1.998

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved