Gene detail information of Glyur001649s00037654.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26010.1 | 4.00E-08 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004507053.1 | 3.60E-115 | PREDICTED: LOW QUALITY PROTEIN: F-box protein At5g07610-like [Cicer arietinum] |
| Swissprot | tr|Q9LIR1|FB182_ARATH | 3.00E-06 | Putative F-box protein At3g23960 |
| trEMBL | tr|G7JEH0|G7JEH0_MEDTR | 5.00E-113 | F-box protein {ECO:0000313|EMBL:AES86460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01649 | 59265 | 60401 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001649s00037654.1 | PF00646.28 | F-box | 18 | 58 | 7.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.211 |
| SRR1783600 | control | 0.194 |
| SRR1783602 | moderate drought stress | 0.201 |
| SRR1811619 | moderate drought stress | 0.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.245 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.037 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.126 |
| SRR2967015 | Control (Tissue:root) | 0.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.058 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.054 |
| SRR9715743 | Root | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.071 |
| SRR8749028 | MeJA induced 9h | 0.127 |
| SRR8749029 | MeJA induced 9h | 0.067 |
| SRR8749030 | Uninduced | 0.056 |
| SRR8749031 | Uninduced | 0.228 |
| SRR8749032 | Uninduced | 0.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.787 |
| SRR8400027 | Control-Root | 0.711 |