Gene detail information of Glyur001652s00038192.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13870.1 | 3.00E-121 | xyloglucan endotransglucosylase/hydrolase 5 |
| NR | NP_001242225.1 | 1.82E-179 | uncharacterized protein LOC100793686 precursor [Glycine max] |
| COG | YP_002264432.1 | 1.00E-07 | exported glycosyl hydrolase, family 16 [Aliivibrio salmonicida LFI1238] |
| Swissprot | tr|Q41638|XTHA_PHAAN | 0 | Xyloglucan endotransglucosylase/hydrolase protein A (Precursor) |
| trEMBL | tr|C6TET5|C6TET5_SOYBN | 7.00E-180 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01652 | 6997 | 12167 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001652s00038192.1 | PF00722.16 | Glyco_hydro_16 | 33 | 204 | 1.00E-47 |
| Glyur001652s00038192.1 | PF06955.7 | XET_C | 228 | 268 | 2.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.010 |
| SRR1783600 | control | 0.027 |
| SRR1783602 | moderate drought stress | 6.698 |
| SRR1811619 | moderate drought stress | 7.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.795 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.137 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.223 |
| SRR2967015 | Control (Tissue:root) | 19.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 36.792 |
| SRR9715740 | Leave | 2.888 |
| SRR9715741 | Leave | 10.715 |
| SRR9715739 | Root | 0.649 |
| SRR9715742 | Root | 0.416 |
| SRR9715743 | Root | 0.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.030 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.067 |
| SRR8400027 | Control-Root | 1.029 |