Gene detail information of Glyur001653s00028816.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37980.1 | 3.00E-109 | elicitor-activated gene 3-1 |
| NR | XP_004512560.1 | 1.49E-174 | PREDICTED: probable mannitol dehydrogenase-like [Cicer arietinum] |
| COG | YP_546314.1 | 5.00E-91 | zinc-binding alcohol dehydrogenase [Methylobacillus flagellatus KT] |
| Swissprot | tr|Q9ZRF1|MTDH_FRAAN | 3.00E-159 | Probable mannitol dehydrogenase |
| trEMBL | tr|I3T3L8|I3T3L8_LOTJA | 6.00E-173 | Uncharacterized protein {ECO:0000313|EMBL:AFK47110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01653 | 5417 | 8997 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00083 | E1.1.1.195 | EC:1.1.1.195 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001653s00028816.1 | PF08240.7 | ADH_N | 38 | 124 | 2.70E-11 |
| Glyur001653s00028816.1 | PF00107.21 | ADH_zinc_N | 167 | 270 | 2.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.053 |
| SRR1783600 | control | 0.123 |
| SRR1783602 | moderate drought stress | 0.027 |
| SRR1811619 | moderate drought stress | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.772 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.204 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.175 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.210 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.722 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.677 |
| SRR2967015 | Control (Tissue:root) | 0.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 41.600 |
| SRR9715740 | Leave | 83.147 |
| SRR9715741 | Leave | 48.205 |
| SRR9715739 | Root | 0.048 |
| SRR9715742 | Root | 1.789 |
| SRR9715743 | Root | 1.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.693 |
| SRR8400027 | Control-Root | 1.548 |