Gene detail information of Glyur001653s00028824.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15560.10Deoxyxylulose-5-phosphate synthase
NRXP_003530591.10PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic-like [Glycine max]
COGYP_001412061.101-deoxy-D-xylulose-5-phosphate synthase [Parvibaculum lavamentivorans DS-1]
Swissprottr|Q6YU51|DXS2_ORYSJ0Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBLtr|I1KX60|I1KX60_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G37670.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016534643951883+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01662dxs EC:2.2.1.7 Thiamine metabolism map00730
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0016114  terpenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008661  1-deoxy-D-xylulose-5-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001653s00028824.1PF13292.1DXP_synthase_N741936.30E-57
Glyur001653s00028824.1PF13292.1DXP_synthase_N1953345.70E-31
Glyur001653s00028824.1PF02779.19Transket_pyr3784982.40E-21
Glyur001653s00028824.1PF02780.15Transketolase_C5166045.50E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control87.432
SRR1783600control87.607
SRR1783602moderate drought stress125.688
SRR1811619moderate drought stress124.929

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.526
DRR006520Root Summer glycyrrhizin high producing strain0.440
DRR006521Root Winter glycyrrhizin high producing strain2.516
DRR006522Root Winter glycyrrhizin high producing strain2.484
DRR006523Root Summer glycyrrhizin low producing strain3.450
DRR006524Root Summer glycyrrhizin low producing strain3.750
DRR006525Leaf Summer glycyrrhizin high producing strain9.912
DRR006526Leaf Summer glycyrrhizin high producing strain9.883

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)138.670
SRR2868004Drought Stress(Tissue:root)505.464
SRR2967015Control (Tissue:root)398.986

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.291
SRR9715740Leave10.521
SRR9715741Leave10.698
SRR9715739Root16.243
SRR9715742Root53.445
SRR9715743Root45.627

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.948
SRR8749028MeJA induced 9h2.515
SRR8749029MeJA induced 9h0.899
SRR8749030Uninduced5.065
SRR8749031Uninduced31.933
SRR8749032Uninduced9.895

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root218.453
SRR8400027Control-Root140.303

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved