Gene detail information of Glyur001653s00028826.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66240.11.00E-157Transducin/WD40 repeat-like superfamily protein
NRXP_003550243.10PREDICTED: WD repeat-containing protein 82-B-like isoform X1 [Glycine max]
COGYP_003167824.12.00E-21WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
Swissprottr|P93107|PF20_CHLRE9.00E-12Flagellar WD repeat-containing protein Pf20
trEMBLtr|I1MX41|I1MX41_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33900.8}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016535646460359+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001653s00028826.1PF00400.27WD4031625.20E-05
Glyur001653s00028826.1PF00400.27WD401131495.20E-05
Glyur001653s00028826.1PF00400.27WD402582790.00098


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.366
SRR1783600control7.476
SRR1783602moderate drought stress9.551
SRR1811619moderate drought stress9.807

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.287
DRR006520Root Summer glycyrrhizin high producing strain16.891
DRR006521Root Winter glycyrrhizin high producing strain33.056
DRR006522Root Winter glycyrrhizin high producing strain32.490
DRR006523Root Summer glycyrrhizin low producing strain18.085
DRR006524Root Summer glycyrrhizin low producing strain18.728
DRR006525Leaf Summer glycyrrhizin high producing strain11.825
DRR006526Leaf Summer glycyrrhizin high producing strain11.553

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.215
SRR2868004Drought Stress(Tissue:root)21.832
SRR2967015Control (Tissue:root)24.208

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.431
SRR9715740Leave14.325
SRR9715741Leave14.593
SRR9715739Root7.652
SRR9715742Root9.194
SRR9715743Root9.447

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.289
SRR8749028MeJA induced 9h18.920
SRR8749029MeJA induced 9h15.907
SRR8749030Uninduced15.294
SRR8749031Uninduced9.405
SRR8749032Uninduced15.015

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.927
SRR8400027Control-Root19.502

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved