Gene detail

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Gene detail information of Glyur001659s00036862.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68750.1	8.00E-145	phosphoenolpyruvate carboxylase 4
NR	XP_004490285.1	0	PREDICTED: phosphoenolpyruvate carboxylase 4-like isoform X2 [Cicer arietinum]
COG	YP_741106.1	7.00E-70	phosphoenolpyruvate carboxylase [Alkalilimnicola ehrlichii MLHE-1]
Swissprot	tr\|Q8GVE8\|CAPP4_ARATH	6.00E-172	Phosphoenolpyruvate carboxylase 4
trEMBL	tr\|A0A072TLJ0\|A0A072TLJ0_MEDTR	0	Phosphoenolpyruvate carboxylase {ECO:0000313\|EMBL:KEH17733.1}

Sequence

Transcript Sequence

>Glyur001659s00036862.1
ATGACGGACACCACTGACGACATTGCAGAGGAAATATCCTTCCAGAGCTTCGACGATGACTGTAGATTGCTTGGCAATCTTCTCAACGACATCTTGCAGCGAGAAGTTGGCACCGTTTTCGTTGAGAAACTCGAAAAAATCCGAATCCTTGCACAGAGTGCTTGTAATATGAGACAGGCAGGGATTGAGGACATGGGAGAGCTACTAGAGAAGCAGCTGGCTTCAGATTTATCCAAGATGACATTAGAAGAAGCTCTGACCCTTGCTCGTGCCTTCAGCCATTATCTCACTTTGATGAGTATAGCTGAAACCCACCATAGGGTTCGCAAAGGAGTAAACATGGCAAATATTGCAAAATCTTGTGATGACATCTTTAACCAGCTGGTGCAAGGTGGAGTTTCCCCAGATGATCTTTATGACACAGTTTGCAAGCAGGCAGTTGAAATTGTTCTTACAGCTCATCCCACACAAATTAATCGCCGTACCTTGCAATACAAACACATTAAAATTGCTCATCTTTTGGATTATAATGATCGACCTGATCTTAGCCATGAGGACCGAGAAATGGTGATTGAAGATCTGTGGAAGAACCCCTCAATTTATTTTTCAATTCTCCCAGGATTGAATATTGTAGAGCAGTCACTCTGGAATGCTGTTCCTCGTTATTTACGTCGAGTCAGCAATGCTTTAAAGAAGCATACGGGAAAGCCACTTCCATTGACTTGCACTCCCATTAAGTTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTAACAGCAAAGGTCACAAAAGATGTTTCACTTTTGTCAAGATGGATGGCAATTGACCTCTATGTTCGGGAAGTGGATAGCCTGAGATTTGAGCTATCCATGAACAGGTGTTCCGATAAGTTATCTAGACTGGCACATGAAATTCTAGAAGAATCTGACCATGAGGATTGCCGCGAGCATTGGAATCAACCAGACAGTAGAAATCAGTTGAAACATCAAAATCAACAAGCTTCATTACTTCCAACTAAACTTCCAGCTAGAGCTCATTTACCCTCTTGTGCTGGATGGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01659	44800	58950	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01595	ppc	EC:4.1.1.31	Carbon metabolism	map01200
			Pyruvate metabolism	map00620
			Carbon fixation in photosynthetic organisms	map00710
			Carbon fixation pathways in prokaryotes	map00720
			Methane metabolism	map00680

Gene Ontology

biological_process

GO:0006099 tricarboxylic acid cycle

GO:0015977 carbon fixation

molecular_function GO:0003824 catalytic activity GO:0008964 phosphoenolpyruvate carboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001659s00036862.1	PF00311.12	PEPcase	145	316	4.90E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.103
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.166
SRR2868004	Drought Stress(Tissue:root)	0.113
SRR2967015	Control (Tissue:root)	0.133

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.070
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.072
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.030