Gene detail information of Glyur001660s00038407.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02960.4 | 6.00E-06 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004491798.1 | 2.12E-06 | PREDICTED: uncharacterized protein LOC101504331 isoform X1 [Cicer arietinum] |
| trEMBL | tr|V7CN41|V7CN41_PHAVU | 4.00E-06 | Uncharacterized protein {ECO:0000313|EMBL:ESW30645.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01660 | 33446 | 34733 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001660s00038407.1 | PF12906.2 | RINGv | 9 | 31 | 7.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.097 |
| SRR1783600 | control | 13.153 |
| SRR1783602 | moderate drought stress | 10.855 |
| SRR1811619 | moderate drought stress | 10.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.989 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.987 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.644 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.016 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.069 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.469 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.114 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.784 |
| SRR2967015 | Control (Tissue:root) | 5.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.181 |
| SRR9715740 | Leave | 5.666 |
| SRR9715741 | Leave | 5.996 |
| SRR9715739 | Root | 7.376 |
| SRR9715742 | Root | 6.195 |
| SRR9715743 | Root | 6.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.577 |
| SRR8749028 | MeJA induced 9h | 5.764 |
| SRR8749029 | MeJA induced 9h | 5.088 |
| SRR8749030 | Uninduced | 2.630 |
| SRR8749031 | Uninduced | 2.498 |
| SRR8749032 | Uninduced | 1.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.555 |
| SRR8400027 | Control-Root | 11.224 |