Gene detail information of Glyur001663s00027486.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55020.10lipoxygenase 1
NRXP_003531600.20PREDICTED: LOW QUALITY PROTEIN: linoleate 9S-lipoxygenase-like [Glycine max]
Swissprottr|P38414|LOX1_LENCU0Linoleate 9S-lipoxygenase
trEMBLtr|S5XAM1|S5XAM1_VIGRA0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016634670958263-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15718LOX1_5 EC:1.13.11.58 Linoleic acid metabolism map00591


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001663s00027486.1PF01477.18PLAT821722.10E-18
Glyur001663s00027486.1PF00305.14Lipoxygenase1832571.70E-31
Glyur001663s00027486.1PF00305.14Lipoxygenase2636892.00E-215
Glyur001663s00027486.1PF01477.18PLAT7217941.30E-15
Glyur001663s00027486.1PF00305.14Lipoxygenase80514740


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1204.306
SRR1783600control1199.814
SRR1783602moderate drought stress1219.820
SRR1811619moderate drought stress1250.046

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain245.646
DRR006520Root Summer glycyrrhizin high producing strain244.649
DRR006521Root Winter glycyrrhizin high producing strain7.406
DRR006522Root Winter glycyrrhizin high producing strain7.022
DRR006523Root Summer glycyrrhizin low producing strain24.994
DRR006524Root Summer glycyrrhizin low producing strain24.883
DRR006525Leaf Summer glycyrrhizin high producing strain2.785
DRR006526Leaf Summer glycyrrhizin high producing strain2.739

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1849.144
SRR2868004Drought Stress(Tissue:root)810.046
SRR2967015Control (Tissue:root)1135.175

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave108.089
SRR9715740Leave3.634
SRR9715741Leave30.106
SRR9715739Root1526.383
SRR9715742Root1968.970
SRR9715743Root1900.315

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.656
SRR8749028MeJA induced 9h6.437
SRR8749029MeJA induced 9h3.454
SRR8749030Uninduced14.415
SRR8749031Uninduced4.278
SRR8749032Uninduced57.542

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1355.201
SRR8400027Control-Root765.341

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved