Gene detail information of Glyur001667s00038414.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21410.1 | 5.00E-130 | F-box/RNI-like superfamily protein |
| NR | KHN44273.1 | 0 | F-box protein SKP2B [Glycine soja] |
| COG | YP_008562.1 | 1.00E-06 | hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9LPL4|SKP2A_ARATH | 3.00E-174 | F-box protein SKP2A |
| trEMBL | tr|I1KAH6|I1KAH6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G12640.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01667 | 58109 | 61844 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001667s00038414.1 | PF12937.2 | F-box-like | 40 | 73 | 2.40E-07 |
| Glyur001667s00038414.1 | PF13516.1 | LRR_6 | 153 | 176 | 1.3 |
| Glyur001667s00038414.1 | PF13516.1 | LRR_6 | 206 | 229 | 0.0016 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 80.240 |
| SRR1783600 | control | 78.421 |
| SRR1783602 | moderate drought stress | 226.099 |
| SRR1811619 | moderate drought stress | 223.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 142.056 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 141.393 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 95.656 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 94.601 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 70.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 69.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.612 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 36.618 |
| SRR2868004 | Drought Stress(Tissue:root) | 45.477 |
| SRR2967015 | Control (Tissue:root) | 58.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.455 |
| SRR9715740 | Leave | 12.317 |
| SRR9715741 | Leave | 17.306 |
| SRR9715739 | Root | 111.187 |
| SRR9715742 | Root | 77.983 |
| SRR9715743 | Root | 89.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 68.901 |
| SRR8749028 | MeJA induced 9h | 107.105 |
| SRR8749029 | MeJA induced 9h | 99.854 |
| SRR8749030 | Uninduced | 26.919 |
| SRR8749031 | Uninduced | 79.735 |
| SRR8749032 | Uninduced | 108.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 48.476 |
| SRR8400027 | Control-Root | 32.149 |