Gene detail information of Glyur001676s00030623.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50420.1 | 1.00E-121 | scarecrow-like 3 |
| NR | XP_007149009.1 | 0 | hypothetical protein PHAVU_005G032900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LPR8|SCL3_ARATH | 1.00E-149 | Scarecrow-like protein 3 |
| trEMBL | tr|V7BVF7|V7BVF7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW21003.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01676 | 50566 | 52635 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001676s00030623.1 | PF03514.9 | GRAS | 24 | 439 | 1.10E-116 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.177 |
| SRR1783600 | control | 0.184 |
| SRR1783602 | moderate drought stress | 0.053 |
| SRR1811619 | moderate drought stress | 0.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.417 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.408 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.082 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.354 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.569 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.246 |
| SRR2967015 | Control (Tissue:root) | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.080 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.098 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.073 |
| SRR8749028 | MeJA induced 9h | 0.153 |
| SRR8749029 | MeJA induced 9h | 0.244 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.188 |
| SRR8749032 | Uninduced | 0.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.093 |
| SRR8400027 | Control-Root | 0.048 |