Gene detail information of Glyur001679s00031673.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G34930.14.00E-40arogenate dehydrogenase
NRXP_004500528.18.42E-95PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Cicer arietinum]
COGYP_677886.12.00E-08prephenate dehydrogenase [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|Q944B6|TYRA1_ARATH5.00E-46Arogenate dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|G7J2E9|G7J2E9_MEDTR3.00E-92Prephenate dehydrogenase {ECO:0000313|EMBL:AES71254.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016794744749307-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15227TYRAAT EC:1.3.1.78 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0006571  tyrosine biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004665  prephenate dehydrogenase (NADP+) activity

GO:0008977  prephenate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001679s00031673.1PF02153.12PDH2682.00E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.087
SRR1783600control5.770
SRR1783602moderate drought stress5.087
SRR1811619moderate drought stress5.469

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.839
DRR006520Root Summer glycyrrhizin high producing strain18.313
DRR006521Root Winter glycyrrhizin high producing strain1.344
DRR006522Root Winter glycyrrhizin high producing strain1.321
DRR006523Root Summer glycyrrhizin low producing strain35.103
DRR006524Root Summer glycyrrhizin low producing strain36.131
DRR006525Leaf Summer glycyrrhizin high producing strain5.525
DRR006526Leaf Summer glycyrrhizin high producing strain5.920

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.904
SRR2868004Drought Stress(Tissue:root)15.515
SRR2967015Control (Tissue:root)11.927

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.094
SRR9715740Leave4.298
SRR9715741Leave6.196
SRR9715739Root1.080
SRR9715742Root11.010
SRR9715743Root8.738

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.828
SRR8749028MeJA induced 9h4.118
SRR8749029MeJA induced 9h5.809
SRR8749030Uninduced0.732
SRR8749031Uninduced0.237
SRR8749032Uninduced0.296

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.650
SRR8400027Control-Root10.520

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved