Gene detail information of Glyur001682s00037303.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04360.1 | 1.00E-70 | RING/U-box superfamily protein |
| NR | XP_004497851.1 | 2.96E-126 | PREDICTED: RING-H2 finger protein ATL16-like [Cicer arietinum] |
| Swissprot | tr|P93823|ATL1_ARATH | 8.00E-84 | RING-H2 finger protein ATL1 |
| trEMBL | tr|K7LK91|K7LK91_SOYBN | 3.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G33090.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01682 | 25932 | 27050 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001682s00037303.1 | PF13639.1 | zf-RING_2 | 132 | 175 | 2.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.328 |
| SRR1783600 | control | 0.405 |
| SRR1783602 | moderate drought stress | 0.034 |
| SRR1811619 | moderate drought stress | 0.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.197 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.198 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.503 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.440 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.213 |
| SRR2967015 | Control (Tissue:root) | 1.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.636 |
| SRR9715740 | Leave | 14.438 |
| SRR9715741 | Leave | 9.794 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.052 |
| SRR9715743 | Root | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.567 |
| SRR8400027 | Control-Root | 0.901 |